Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DTQ05_RS04875 Genome accession   NZ_CP030931
Coordinates   954917..956623 (+) Length   568 a.a.
NCBI ID   WP_023467587.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain AMCC 101217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949917..961623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ05_RS04850 xseB 950396..950617 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  DTQ05_RS04855 - 950614..951483 (+) 870 WP_149426974.1 polyprenyl synthetase family protein -
  DTQ05_RS04860 dxs 951601..953487 (+) 1887 WP_149426975.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DTQ05_RS04865 - 953494..954300 (+) 807 WP_064300283.1 TlyA family RNA methyltransferase -
  DTQ05_RS04870 argR 954455..954904 (+) 450 WP_023467586.1 transcriptional regulator ArgR -
  DTQ05_RS04875 recN 954917..956623 (+) 1707 WP_023467587.1 DNA repair protein RecN Machinery gene
  DTQ05_RS04880 spo0A 956627..957349 (+) 723 WP_074668437.1 sporulation transcription factor Spo0A -
  DTQ05_RS04885 - 957386..957964 (-) 579 WP_149426976.1 dihydrofolate reductase family protein -
  DTQ05_RS04890 - 958640..958894 (-) 255 WP_058265115.1 DUF2627 family protein -
  DTQ05_RS04895 - 959017..960672 (+) 1656 WP_058704307.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64162.70 Da        Isoelectric Point: 4.5994

>NTDB_id=302482 DTQ05_RS04875 WP_023467587.1 954917..956623(+) (recN) [Exiguobacterium acetylicum strain AMCC 101217]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYDLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQETIAPLLQ
AYQSGYQAYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFEIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=302482 DTQ05_RS04875 WP_023467587.1 954917..956623(+) (recN) [Exiguobacterium acetylicum strain AMCC 101217]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCGATCGGATTATTGATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGAGCGGAGCTAGAAGGATTGTTTCTGATTGAAGACGACCATCTCGTCTATGATCTCGCA
GAAGAGTATGGTATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTGACGATCTTACGGGAGTTCGGGCGTGTCCTCGTCGACATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCGCAAGAGACGATTGCACCGCTCCTTCAA
GCCTATCAATCCGGTTATCAAGCGTATGAAGAAAAACGGACGGCGCTGCAATCGCTCGCGCAAAGTGAGCAAGAACTCGC
TCAACGGATTGATCTACTATCGTTCCAGACAGAAGAGATTGAAGGCGCAAAACTTCGAGCACATGAGGAAGACGAGTTGC
TCGTCGAACGAAATCGTCTCGCGAATTTCGAGAAGCTATATGCGTCGTTAAAGACAGCGTACGATGCTTTGCATGATGAG
ATGCGCGGCATCGACTCTGTTGGAGACGCGATGCGTGAATTACAACAAGCATCAAGCATCGACGAACAGTTTTCGCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTCGAAGAAGTCGGGTATGCGATTCGAGATCAACTCGAAACACTTGAGT
TCGATTCCAATCGACTCGATGAGATCGAACAACGTTTATCCGTCTTTCAACAACTGAAACGAAAATACGGGGCGACGATC
GAGGAAGTCATCGCGTATGGGGAGAAGATTCGAGTTGAACTCGATACGATGACGAATCGAGATGAACGGATTGAACGCTT
AAAAGCCGAAGTCGAACAGCTCGAAGGCGAATTGTTTGAGATAGGTGGGCGTCTGTCGCAACAGCGTCGAAAAGCGGCCG
TTCAATTAAGCGAAGCGATTCATCTGGAGTTGCGTGAGCTCTACATGGAAAAAGCACGGTTTGAAATTCGTTTTCTTCAA
GACGGGAAGACACCGATGCTACGCAAGAACGGAATCGACCAAGTGGAGTTCTTCATCATGACGAATGCGGGAGAGCCATT
CAAGTCGCTCGGAAAAGTTGCATCGGGCGGGGAGTTATCTCGTATCATGCTCGGACTGAAGTCAATCTTCTCGCGCTCGG
TCGGAGTTGCTTCGATCATTTTCGATGAAGTCGATACAGGAGTATCGGGTCGTGTCGCACAAGCGATGGCTGAAAAAATC
TATCGATTATCGGTAGACGGACAAGTGCTTTGTATTACGCACTTACCGCAAGTCGCTTCGATGGCCGATCAACATCTCTA
TATTCGGAAAATCGAGGAGACGGATCGTACGACGACACAGGTCAACGTCTTGTCTCAGTCAGATCGAGGAAACGAACTAG
GACGGATGATTTCCGGTGCACATATGACGGATTTGACGTTACGCCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.054

100

0.535

Multiple sequence alignment