Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ETT55_RS00675 Genome accession   NZ_CP035444
Coordinates   103926..104354 (+) Length   142 a.a.
NCBI ID   WP_136021758.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm90.5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98926..109354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT55_RS00655 (ETT55_00655) - 101257..101622 (+) 366 WP_030126461.1 DUF1033 family protein -
  ETT55_RS00660 (ETT55_00660) comGA 101715..102653 (+) 939 WP_002993471.1 competence type IV pilus ATPase ComGA Machinery gene
  ETT55_RS00665 (ETT55_00665) comGB 102589..103623 (+) 1035 WP_227875237.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT55_RS00670 (ETT55_00670) comGC 103625..103951 (+) 327 WP_011528161.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT55_RS00675 (ETT55_00675) comGD 103926..104354 (+) 429 WP_136021758.1 competence type IV pilus minor pilin ComGD Machinery gene
  ETT55_RS00680 (ETT55_00680) comGE 104311..104595 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  ETT55_RS00685 (ETT55_00685) comGF 104588..105022 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT55_RS00690 (ETT55_00690) comGG 105006..105332 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ETT55_RS00695 (ETT55_00695) comGH 105430..106383 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  ETT55_RS00700 (ETT55_00700) - 106442..107638 (+) 1197 WP_030126459.1 acetate kinase -
  ETT55_RS00705 (ETT55_00705) - 107824..108132 (+) 309 WP_030126458.1 hypothetical protein -
  ETT55_RS00710 (ETT55_00710) proC 108215..108985 (-) 771 WP_023078993.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16382.10 Da        Isoelectric Point: 10.2282

>NTDB_id=302472 ETT55_RS00675 WP_136021758.1 103926..104354(+) (comGD) [Streptococcus pyogenes strain emm90.5]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMEGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=302472 ETT55_RS00675 WP_136021758.1 103926..104354(+) (comGD) [Streptococcus pyogenes strain emm90.5]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTGATTGATCAGATGGAAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

39.706

95.775

0.38
  comGD Streptococcus gordonii str. Challis substr. CH1

39.695

92.254

0.366

Multiple sequence alignment