Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ETT56_RS07270 Genome accession   NZ_CP035443
Coordinates   1414726..1415424 (+) Length   232 a.a.
NCBI ID   WP_111695855.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm58     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1409726..1420424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS07255 (ETT56_07255) - 1411214..1413997 (-) 2784 WP_111695854.1 type 2 lanthipeptide synthetase LanM family protein -
  ETT56_RS07260 (ETT56_07260) - 1414018..1414173 (-) 156 WP_023612118.1 lacticin 481 family lantibiotic -
  ETT56_RS07265 (ETT56_07265) - 1414373..1414528 (-) 156 WP_023612114.1 lacticin 481 family lantibiotic -
  ETT56_RS07270 (ETT56_07270) scnR 1414726..1415424 (+) 699 WP_111695855.1 response regulator transcription factor Regulator
  ETT56_RS07275 (ETT56_07275) - 1415442..1416803 (+) 1362 WP_109821250.1 sensor histidine kinase KdpD -
  ETT56_RS07280 (ETT56_07280) - 1417020..1417535 (-) 516 WP_136022160.1 helical hairpin domain-containing protein -
  ETT56_RS07285 (ETT56_07285) - 1417555..1418680 (+) 1126 Protein_1360 IS3 family transposase -
  ETT56_RS07290 (ETT56_07290) - 1419053..1419469 (-) 417 WP_027968806.1 hypothetical protein -
  ETT56_RS07295 (ETT56_07295) - 1419466..1419951 (-) 486 WP_023610437.1 hypothetical protein -
  ETT56_RS07300 (ETT56_07300) - 1420071..1420271 (-) 201 WP_011017514.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26247.38 Da        Isoelectric Point: 5.7371

>NTDB_id=302438 ETT56_RS07270 WP_111695855.1 1414726..1415424(+) (scnR) [Streptococcus pyogenes strain emm58]
MDFESQLLNKRILIVDDDVALSKSIKEVLISRDFKNISCAYSISEGIDIFSVSKIDLIILDVMLPDGEGHLLAKYIRKYS
DVPILFLTAKNNPDDEIRGLESGGDDYVTKPFLPKSLTYRIIALLRRAYKDESELIELTNCTIDLNNASVEKNGQHLSLT
PTEIQILRKLFSNKNYIASTESICDTVWGLESLGYEKSLMVHIRNIREKIEITPSKPNHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=302438 ETT56_RS07270 WP_111695855.1 1414726..1415424(+) (scnR) [Streptococcus pyogenes strain emm58]
ATGGATTTTGAGTCTCAATTATTGAATAAACGCATATTGATTGTCGACGATGATGTCGCACTTAGCAAATCAATTAAAGA
GGTACTTATCAGTCGGGATTTCAAGAATATCAGCTGTGCTTATAGTATAAGCGAAGGAATTGATATCTTCTCAGTTTCTA
AAATTGATCTCATTATTTTAGATGTTATGCTACCAGATGGAGAAGGGCACTTACTTGCAAAATACATTAGGAAATATTCA
GATGTGCCAATTCTCTTTTTAACAGCCAAAAACAATCCTGATGATGAAATTCGAGGACTTGAATCCGGAGGGGATGATTA
TGTTACGAAGCCATTTCTTCCCAAATCTTTAACATATCGTATTATTGCACTGTTGAGAAGGGCTTATAAAGATGAATCGG
AACTAATTGAGCTAACAAATTGTACCATAGACTTAAACAATGCAAGTGTTGAAAAAAATGGTCAACATTTGTCACTCACT
CCAACAGAAATACAAATCCTACGAAAATTATTTTCAAATAAAAATTATATTGCATCAACTGAATCGATTTGTGATACCGT
TTGGGGACTTGAGAGCCTTGGCTACGAAAAATCACTTATGGTACATATTCGTAATATCAGAGAAAAAATCGAGATAACTC
CATCTAAGCCAAATCATCTTATTACTGTAAAAGGGCTTGGTTATAAACTAGTTATATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)

Response regulator receiver domain (Response_reg)

(12-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.704

96.121

0.401
  vicR Streptococcus mutans UA159

38.528

99.569

0.384
  micA Streptococcus pneumoniae Cp1015

37.826

99.138

0.375

Multiple sequence alignment