Detailed information NTG0302154

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Ysp71_RS26690
• Genome accession: NZ_CP030911
• Coordinates: 5541192..5542064 (+)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Y71
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5536192..5547064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Ysp71_RS26665 (Ysp71_5124)	-	5537091..5537333 (+)	243	WP_023082027.1	hypothetical protein	-
Ysp71_RS26675	-	5537564..5538037 (-)	474	WP_015503553.1	pilin	-
Ysp71_RS26680 (Ysp71_5125)	pilB	5538268..5539968 (+)	1701	WP_003120945.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Ysp71_RS26685 (Ysp71_5126)	pilC	5539972..5541189 (+)	1218	WP_010792214.1	type II secretion system F family protein	Machinery gene
Ysp71_RS26690 (Ysp71_5127)	pilD	5541192..5542064 (+)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
Ysp71_RS26695 (Ysp71_5128)	coaE	5542061..5542672 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
Ysp71_RS26700 (Ysp71_5129)	yacG	5542669..5542869 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
Ysp71_RS26705 (Ysp71_5130)	-	5542906..5543115 (-)	210	WP_003120946.1	hypothetical protein	-
Ysp71_RS26710 (Ysp71_5131)	-	5543221..5543910 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
Ysp71_RS26715 (Ysp71_5132)	-	5543907..5544377 (-)	471	WP_019486073.1	hypothetical protein	-
Ysp71_RS26720 (Ysp71_5133)	-	5544374..5544799 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
Ysp71_RS26725 (Ysp71_5134)	-	5544932..5545561 (+)	630	WP_003120948.1	DUF1780 domain-containing protein	-
Ysp71_RS26730 (Ysp71_5135)	-	5545558..5546007 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
Ysp71_RS26735 (Ysp71_5136)	-	5546033..5546203 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=302154 Ysp71_RS26690 WP_003116251.1 5541192..5542064(+) (pilD) [Pseudomonas aeruginosa strain Y71]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=302154 Ysp71_RS26690 WP_003116251.1 5541192..5542064(+) (pilD) [Pseudomonas aeruginosa strain Y71]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472