Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Y31_RS26740 Genome accession   NZ_CP030910
Coordinates   5610019..5611356 (+) Length   445 a.a.
NCBI ID   WP_115759778.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Y31     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5605019..5616356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y31_RS26715 (Y31_5135) pgeF 5605162..5605890 (-) 729 WP_003123393.1 peptidoglycan editing factor PgeF -
  Y31_RS26720 (Y31_5136) rluD 5605887..5606849 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Y31_RS26725 (Y31_5137) - 5606995..5608020 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  Y31_RS26730 (Y31_5138) - 5608177..5608422 (+) 246 WP_003102591.1 PP0621 family protein -
  Y31_RS26735 (Y31_5139) pilS 5608412..5610004 (+) 1593 WP_003123394.1 two-component system sensor histidine kinase PilS Regulator
  Y31_RS26740 (Y31_5140) pilR 5610019..5611356 (+) 1338 WP_115759778.1 two-component system response regulator PilR Regulator
  Y31_RS26745 (Y31_5141) thiO 5611402..5612496 (-) 1095 WP_115759879.1 glycine oxidase ThiO -
  Y31_RS26750 (Y31_5142) - 5612631..5613140 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  Y31_RS26755 (Y31_5143) - 5613246..5613752 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  Y31_RS26760 (Y31_5144) pilV 5613743..5614300 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  Y31_RS26765 (Y31_5145) pilW 5614297..5615121 (+) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  Y31_RS26770 (Y31_5146) pilX 5615118..5615705 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49733.07 Da        Isoelectric Point: 5.8654

>NTDB_id=302125 Y31_RS26740 WP_115759778.1 5610019..5611356(+) (pilR) [Pseudomonas aeruginosa strain Y31]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCAPHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=302125 Y31_RS26740 WP_115759778.1 5610019..5611356(+) (pilR) [Pseudomonas aeruginosa strain Y31]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCCCCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

37.946

100

0.382

Multiple sequence alignment