Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DS737_RS06875 Genome accession   NZ_CP030880
Coordinates   1513664..1514371 (-) Length   235 a.a.
NCBI ID   WP_005082645.1    Uniprot ID   A0A5P1UT60
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508664..1519371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS06860 - 1509320..1510912 (+) 1593 WP_113997168.1 urea amidolyase family protein -
  DS737_RS06865 - 1510896..1512626 (+) 1731 WP_113997169.1 biotin carboxylase N-terminal domain-containing protein -
  DS737_RS06870 - 1512682..1513461 (-) 780 WP_004639486.1 M48 family metallopeptidase -
  DS737_RS06875 crp 1513664..1514371 (-) 708 WP_005082645.1 cAMP-activated global transcriptional regulator CRP Regulator
  DS737_RS06880 - 1514518..1514940 (+) 423 WP_005082647.1 OsmC family protein -
  DS737_RS06885 - 1515005..1515805 (-) 801 WP_162784538.1 peptidoglycan DD-metalloendopeptidase family protein -
  DS737_RS06890 clpB 1516069..1518648 (+) 2580 WP_113997171.1 ATP-dependent chaperone ClpB -
  DS737_RS06895 - 1518818..1519243 (+) 426 WP_004639475.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26618.22 Da        Isoelectric Point: 4.8321

>NTDB_id=302021 DS737_RS06875 WP_005082645.1 1513664..1514371(-) (crp) [Acinetobacter haemolyticus strain HW-2A]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESRSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFPEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=302021 DS737_RS06875 WP_005082645.1 1513664..1514371(-) (crp) [Acinetobacter haemolyticus strain HW-2A]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGCCAACTACCTGAATCAGTAAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAGATCACTGTATTTAATTT
TAAAAGGTTCAGTATCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTTGTTGCTTATTTGAACCCTGGGGATTTC
TTTGGTGAGATGGGTCTTTTTGAAAAGAACCCTCAACGTACTGCTGAAGTACGCACTCGAGATGTATGCGAAATTGCAGA
GATTTCTTATGACAATTTCCATGAATTAAGTAAACAGTATCCTGATTTAAGTTACGCAGTATTTGCTCAACTGGTGCGTC
GTCTTAAAAACACAACTCGTAAAGTAACTGACCTTGCCTTTATCGACGTTTCAGGTCGTATTGCACGTTGCTTAATCGAC
TTATCTGCTCAACCAGAGGCAATGATTTTACCGAATGGTCGTCAGATTCGTATCACTCGTCAAGAGATTGGTCGTATTGT
CGGTTGCTCTCGTGAAATGGTTGGTCGTGTCCTCAAAACACTTGAAGACCAAGGCATGATCCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATGCGTCTTTAGAGGAAAATACCTTTCCTGAAGATGAATATGATGATGAAGATTGA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UT60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.617

100

0.936
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409

Multiple sequence alignment