Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DRA66_RS02650 Genome accession   NZ_CP030825
Coordinates   517492..518085 (+) Length   197 a.a.
NCBI ID   WP_002255851.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-208     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512492..523085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA66_RS02625 (DRA66_03030) - 512735..513322 (-) 588 WP_154074380.1 superoxide dismutase -
  DRA66_RS02630 (DRA66_03040) dnaB 513485..514891 (+) 1407 WP_002213843.1 replicative DNA helicase -
  DRA66_RS02635 (DRA66_03045) pilH 515200..515868 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA66_RS02640 (DRA66_03050) pilV 515898..516518 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  DRA66_RS02645 (DRA66_03055) pilJ 516515..517513 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  DRA66_RS02650 (DRA66_03060) pilK 517492..518085 (+) 594 WP_002255851.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA66_RS02655 (DRA66_03065) pilX 518090..518563 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  DRA66_RS02660 (DRA66_03075) - 519443..519871 (-) 429 Protein_510 AzlC family ABC transporter permease -
  DRA66_RS02665 (DRA66_03080) dut 520014..520466 (+) 453 WP_002250021.1 dUTP diphosphatase -
  DRA66_RS02670 (DRA66_03085) dapC 520542..521729 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  DRA66_RS11400 - 521817..521942 (+) 126 Protein_513 IS5/IS1182 family transposase -
  DRA66_RS02675 (DRA66_03090) yaaA 521991..522770 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21512.39 Da        Isoelectric Point: 6.3728

>NTDB_id=301715 DRA66_RS02650 WP_002255851.1 517492..518085(+) (pilK) [Neisseria meningitidis strain 12-208]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMVYGKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=301715 DRA66_RS02650 WP_002255851.1 517492..518085(+) (pilK) [Neisseria meningitidis strain 12-208]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGTATATGGGAAAGGCACGCAAAGTGTCAGCAAACCGCCGCGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888

Multiple sequence alignment