Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ETT64_RS08825 Genome accession   NZ_CP035435
Coordinates   1710310..1710906 (-) Length   198 a.a.
NCBI ID   WP_136293040.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705310..1715906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS08790 (ETT64_08785) - 1705370..1705675 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT64_RS08795 (ETT64_08790) ruvX 1705687..1706106 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ETT64_RS08800 (ETT64_08795) - 1706103..1706372 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ETT64_RS08805 (ETT64_08800) spx 1706486..1706884 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT64_RS08810 (ETT64_08805) recA 1707175..1708311 (-) 1137 WP_023612663.1 recombinase RecA Machinery gene
  ETT64_RS08815 (ETT64_08810) cinA 1708400..1709671 (-) 1272 WP_136021357.1 competence/damage-inducible protein A Machinery gene
  ETT64_RS08820 (ETT64_08815) - 1709740..1710300 (-) 561 WP_010922755.1 DNA-3-methyladenine glycosylase I -
  ETT64_RS08825 (ETT64_08820) ruvA 1710310..1710906 (-) 597 WP_136293040.1 Holliday junction branch migration protein RuvA Machinery gene
  ETT64_RS08830 (ETT64_08825) - 1710908..1712128 (-) 1221 WP_002992187.1 MFS transporter -
  ETT64_RS08835 (ETT64_08830) hexB 1712139..1714121 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21856.23 Da        Isoelectric Point: 6.7342

>NTDB_id=301698 ETT64_RS08825 WP_136293040.1 1710310..1710906(-) (ruvA) [Streptococcus pyogenes strain emm64.3]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=301698 ETT64_RS08825 WP_136293040.1 1710310..1710906(-) (ruvA) [Streptococcus pyogenes strain emm64.3]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCTCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.872

100

0.429

Multiple sequence alignment