Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DPR03_RS12600 Genome accession   NZ_CP030754
Coordinates   2624192..2626429 (+) Length   745 a.a.
NCBI ID   WP_071320702.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2619192..2631429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS12580 lnt 2619910..2621472 (+) 1563 WP_071320704.1 apolipoprotein N-acyltransferase -
  DPR03_RS12585 - 2621675..2622010 (-) 336 WP_004890469.1 hypothetical protein -
  DPR03_RS12590 gspG 2622295..2622762 (-) 468 WP_227499334.1 type II secretion system major pseudopilin GspG -
  DPR03_RS12595 gspF 2622851..2624056 (-) 1206 WP_071320703.1 type II secretion system inner membrane protein GspF -
  DPR03_RS12600 priA 2624192..2626429 (+) 2238 WP_071320702.1 primosomal protein N' Machinery gene
  DPR03_RS12605 - 2626471..2628324 (+) 1854 WP_071320701.1 cation:proton antiporter -
  DPR03_RS12610 hslO 2628375..2629250 (+) 876 WP_004813475.1 Hsp33 family molecular chaperone HslO -
  DPR03_RS12615 - 2629712..2630176 (+) 465 WP_081409055.1 DUF2147 domain-containing protein -
  DPR03_RS12620 - 2630371..2630832 (+) 462 Protein_2431 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84439.38 Da        Isoelectric Point: 8.6431

>NTDB_id=301339 DPR03_RS12600 WP_071320702.1 2624192..2626429(+) (priA) [Acinetobacter schindleri strain H3]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAKVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTINRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=301339 DPR03_RS12600 WP_071320702.1 2624192..2626429(+) (priA) [Acinetobacter schindleri strain H3]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTAAGGTTGGTGCGCGCGTGGCGGTGTCTTTTG
GCCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTGCCGCCAGACACTCCACTAGATTCCAGTTTTAAACTTAAAGAG
ATTACGGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACTTTATTACGTCAAGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTGCGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACCACTGAAACTGTACTGAACCTGGCAGGGATCGAAACAGCTACCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGTGTGCTGGAAGCACAGGATTTCAGCCCGCAGCCTGTTCAACTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAGCAGGTGCTGAAATTTAAAAATAAATATCAGGCTTTCTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAACCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGTTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCTAATCTGGGACTGATCATCCTGGATGAGGAACATGATCTGTCCTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GTATCGATACCTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTCAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTCTAGATTTAAAGGTGGCACAGAAACAGCATGGCATCAGCCTGCATCTGATTCAGGAAATACGCAA
ACGTCTGGAAAAAAAGGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTCCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTTGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAGTCATTCGGGTAGATCGTGACTCTACCAGTCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAACCGGCGATTTTGCTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTGGACTTCCGTGCCACCGA
ACGTACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCATAAAGGTGATGTCTATCTACAGACCT
TACGTCCTGACCATGCTTTGCTAAATACCTTGGTGACAGATAACTACCGGGCTTTTGCCAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTACAACTGGAGATCTGGGGACCTATTCCAGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATGTCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAGCCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAACTGAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.867

99.06

0.702

Multiple sequence alignment