Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DPR03_RS12915 Genome accession   NZ_CP030754
Coordinates   2697977..2698303 (-) Length   108 a.a.
NCBI ID   WP_026056799.1    Uniprot ID   A0AAE7BXZ8
Organism   Acinetobacter schindleri strain H3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692977..2703303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS12895 - 2693174..2693827 (-) 654 WP_071320834.1 FHA domain-containing protein -
  DPR03_RS12900 gspD 2693892..2696144 (-) 2253 WP_071320835.1 type II secretion system secretin GspD -
  DPR03_RS12905 - 2696183..2697049 (-) 867 WP_071320836.1 type II secretion system protein N -
  DPR03_RS12910 gspN 2697049..2697792 (-) 744 WP_004890585.1 type II secretion system protein N -
  DPR03_RS12915 hns 2697977..2698303 (-) 327 WP_026056799.1 H-NS family nucleoid-associated regulatory protein Regulator
  DPR03_RS12920 - 2698446..2698874 (-) 429 WP_071320837.1 acyl-CoA thioesterase -
  DPR03_RS12925 - 2698885..2700078 (-) 1194 WP_071320838.1 heme biosynthesis HemY N-terminal domain-containing protein -
  DPR03_RS12930 - 2700085..2700912 (-) 828 WP_071320839.1 hypothetical protein -
  DPR03_RS12935 - 2700909..2701688 (-) 780 WP_071320840.1 uroporphyrinogen-III synthase -
  DPR03_RS12940 hemC 2701694..2702614 (-) 921 WP_071320841.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.07 Da        Isoelectric Point: 5.3249

>NTDB_id=301340 DPR03_RS12915 WP_026056799.1 2697977..2698303(-) (hns) [Acinetobacter schindleri strain H3]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=301340 DPR03_RS12915 WP_026056799.1 2697977..2698303(-) (hns) [Acinetobacter schindleri strain H3]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAGCATTGCAGAAAAAGTAGGTATGAGCATTGAGCAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACTTGGACAGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCAGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment