Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DPR03_RS08870 Genome accession   NZ_CP030754
Coordinates   1838422..1839126 (-) Length   234 a.a.
NCBI ID   WP_004812290.1    Uniprot ID   N9N930
Organism   Acinetobacter schindleri strain H3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833422..1844126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS08860 clpB 1834361..1836940 (-) 2580 WP_004812293.1 ATP-dependent chaperone ClpB -
  DPR03_RS08865 - 1837191..1838240 (-) 1050 WP_071320497.1 NADP(H)-dependent aldo-keto reductase -
  DPR03_RS08870 crp 1838422..1839126 (-) 705 WP_004812290.1 cAMP-activated global transcriptional regulator CRP Regulator
  DPR03_RS08875 - 1839274..1839696 (+) 423 WP_071320498.1 OsmC family protein -
  DPR03_RS08880 - 1839775..1840815 (-) 1041 WP_071320499.1 metallophosphoesterase -
  DPR03_RS08885 - 1841123..1843360 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26326.95 Da        Isoelectric Point: 4.6679

>NTDB_id=301331 DPR03_RS08870 WP_004812290.1 1838422..1839126(-) (crp) [Acinetobacter schindleri strain H3]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPTEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=301331 DPR03_RS08870 WP_004812290.1 1838422..1839126(-) (crp) [Acinetobacter schindleri strain H3]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGACAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCATATTTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAACTGAGCAAACAATATCCTGACTTGAGTTATGCGGTCTTTGCCCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATTGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTACCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCTCGTGAAATGGTCGGTCGTGTACTGAAAACCCTTGAAGAGCAAGGCATGATCGAAACAGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTTGAACAGAACGAAGTACCGACTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9N930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.162

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment