Detailed information NTG0301317

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: DPR03_RS01500
• Genome accession: NZ_CP030754
• Coordinates: 318008..318523 (+)
• Length: 171 a.a.
• NCBI ID: WP_071319886.1
• Uniprot ID: -
• Organism: Acinetobacter schindleri strain H3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	311729..328969	318008..318523	within	0

Gene organization within MGE regions

Location: 311729..328969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPR03_RS01480	pilV	311729..312223 (+)	495	WP_071319885.1	type IV pilus modification protein PilV	-
DPR03_RS01485	-	312226..313179 (+)	954	WP_071319810.1	PilW family protein	-
DPR03_RS01490	-	313176..313922 (+)	747	WP_048881777.1	PilX N-terminal domain-containing pilus assembly protein	-
DPR03_RS01495	-	313933..317997 (+)	4065	WP_071319811.1	PilC/PilY family type IV pilus protein	-
DPR03_RS01500	comE	318008..318523 (+)	516	WP_071319886.1	type IV pilin protein	Machinery gene
DPR03_RS01505	-	318517..318984 (+)	468	WP_048881779.1	type IV pilin protein	-
DPR03_RS01510	rpsP	319128..319385 (+)	258	WP_005013161.1	30S ribosomal protein S16	-
DPR03_RS01515	rimM	319404..319952 (+)	549	WP_071319812.1	ribosome maturation factor RimM	-
DPR03_RS01520	trmD	319979..320728 (+)	750	WP_071319813.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
DPR03_RS01525	rplS	320903..321274 (+)	372	WP_004787066.1	50S ribosomal protein L19	-
DPR03_RS16100	-	321341..321565 (-)	225	WP_071319814.1	hypothetical protein	-
DPR03_RS01535	-	321848..322069 (-)	222	WP_228715845.1	hypothetical protein	-
DPR03_RS01540	-	322113..322310 (-)	198	WP_071319817.1	hypothetical protein	-
DPR03_RS01545	-	322380..323348 (-)	969	WP_071319818.1	lipase family alpha/beta hydrolase	-
DPR03_RS01550	-	323617..324627 (-)	1011	WP_071319819.1	lipase family alpha/beta hydrolase	-
DPR03_RS01555	-	325024..326055 (-)	1032	WP_071319820.1	lipase secretion chaperone	-
DPR03_RS01560	truB	326212..327117 (+)	906	WP_071319821.1	tRNA pseudouridine(55) synthase TruB	-
DPR03_RS01565	-	327140..327907 (+)	768	WP_071319822.1	sulfite exporter TauE/SafE family protein	-
DPR03_RS01570	-	328034..328501 (+)	468	WP_004809925.1	hemerythrin domain-containing protein	-
DPR03_RS01575	-	328556..328969 (-)	414	WP_071319823.1	hypothetical protein	-

Sequence

Protein

• Length: 171 a.a.
• Molecular weight: 18714.26 Da
• Isoelectric Point: 9.5848

>NTDB_id=301317 DPR03_RS01500 WP_071319886.1 318008..318523(+) (comE) [Acinetobacter schindleri strain H3]
MRMPQQGFTLIELMVVVAIVAILATIAIPSYQTHTRKAIAGQAQQEIQKLAEQLERHKGKNFSYLGFDPSYLYKDNSGNL
IGYSTTNAQLNLPLNSSGTAVKYIVSVRDGTDTTKLLTNTTALGQRWAIKAESQDPNNFTFLMTSTGIQCKNQTRANVSY
TGCGTGGVNTW

Nucleotide

• Length: 516 bp

>NTDB_id=301317 DPR03_RS01500 WP_071319886.1 318008..318523(+) (comE) [Acinetobacter schindleri strain H3]
ATGCGTATGCCGCAACAAGGATTTACATTAATTGAATTAATGGTGGTGGTTGCAATTGTGGCTATTCTTGCCACCATTGC
AATCCCGAGTTATCAGACTCATACCCGAAAGGCAATCGCTGGTCAGGCCCAGCAGGAAATACAAAAGCTAGCAGAGCAGT
TAGAGCGCCATAAAGGTAAAAATTTCAGCTATTTAGGTTTTGATCCTAGCTATTTGTATAAAGATAATAGTGGAAATTTA
ATTGGTTATAGTACAACTAATGCGCAGCTAAACCTGCCATTAAATAGTTCAGGAACCGCAGTTAAATATATTGTTTCTGT
TCGAGATGGTACAGATACTACTAAACTTTTAACTAATACTACCGCTTTAGGACAAAGATGGGCTATTAAAGCAGAAAGCC
AAGATCCGAATAATTTTACCTTTCTTATGACGAGTACAGGAATCCAGTGTAAAAATCAGACTAGAGCAAATGTATCTTAT
ACAGGGTGTGGCACAGGAGGAGTGAATACGTGGTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Acinetobacter baylyi ADP1	55.689	97.661	0.544
pilY2	Acinetobacter baumannii D1279779	45.283	92.982	0.421