Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | DRF63_RS06905 | Genome accession | NZ_CP030753 |
| Coordinates | 1498077..1498625 (-) | Length | 182 a.a. |
| NCBI ID | WP_005598298.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain S4074 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1493077..1503625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRF63_RS06890 (DRF63_06885) | - | 1493561..1494082 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| DRF63_RS06895 (DRF63_06890) | - | 1494187..1495473 (+) | 1287 | WP_005598292.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| DRF63_RS06900 (DRF63_06895) | - | 1495663..1498002 (-) | 2340 | WP_005598295.1 | Tex family protein | - |
| DRF63_RS06905 (DRF63_06900) | pilF | 1498077..1498625 (-) | 549 | WP_005598298.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| DRF63_RS06910 (DRF63_06905) | - | 1498679..1499860 (-) | 1182 | WP_005598300.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| DRF63_RS06935 (DRF63_06930) | gltX | 1500764..1502203 (+) | 1440 | WP_005598316.1 | glutamate--tRNA ligase | - |
| DRF63_RS06945 (DRF63_06940) | yefM | 1502540..1502791 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| DRF63_RS06950 (DRF63_06945) | - | 1502788..1503048 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| DRF63_RS06955 (DRF63_06950) | - | 1503207..1503374 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20641.32 Da Isoelectric Point: 6.9479
>NTDB_id=301286 DRF63_RS06905 WP_005598298.1 1498077..1498625(-) (pilF) [Actinobacillus pleuropneumoniae strain S4074]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=301286 DRF63_RS06905 WP_005598298.1 1498077..1498625(-) (pilF) [Actinobacillus pleuropneumoniae strain S4074]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |