Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DNH96_RS08150 | Genome accession | NZ_CP030715 |
| Coordinates | 1698552..1699058 (+) | Length | 168 a.a. |
| NCBI ID | WP_014614920.1 | Uniprot ID | A0A161W350 |
| Organism | Staphylococcus pseudintermedius strain VB88 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1693552..1704058
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DNH96_RS08125 (DNH96_08115) | - | 1693913..1694404 (+) | 492 | WP_096533323.1 | hypothetical protein | - |
| DNH96_RS08130 (DNH96_08120) | - | 1694561..1695514 (+) | 954 | WP_096533759.1 | ABC transporter ATP-binding protein | - |
| DNH96_RS08135 (DNH96_08125) | - | 1695507..1696316 (+) | 810 | WP_037541946.1 | ABC transporter permease subunit | - |
| DNH96_RS08140 (DNH96_08130) | sbi | 1696370..1697896 (-) | 1527 | WP_015728518.1 | Ig-binding surface protein Sbi/SpsK | - |
| DNH96_RS08145 (DNH96_08135) | rpsF | 1698233..1698529 (+) | 297 | WP_014614921.1 | 30S ribosomal protein S6 | - |
| DNH96_RS08150 (DNH96_08140) | ssbA | 1698552..1699058 (+) | 507 | WP_014614920.1 | single-stranded DNA-binding protein | Machinery gene |
| DNH96_RS08155 (DNH96_08145) | rpsR | 1699112..1699354 (+) | 243 | WP_014614919.1 | 30S ribosomal protein S18 | - |
| DNH96_RS08160 (DNH96_08150) | - | 1699555..1700385 (+) | 831 | WP_070407296.1 | AraC family transcriptional regulator | - |
| DNH96_RS08165 (DNH96_08155) | - | 1700489..1701814 (+) | 1326 | WP_096533760.1 | ABC transporter substrate-binding protein | - |
| DNH96_RS08170 (DNH96_08160) | - | 1701824..1702723 (+) | 900 | WP_063278722.1 | carbohydrate ABC transporter permease | - |
| DNH96_RS08175 (DNH96_08165) | - | 1702725..1703552 (+) | 828 | WP_063278723.1 | carbohydrate ABC transporter permease | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18738.42 Da Isoelectric Point: 5.1957
>NTDB_id=301115 DNH96_RS08150 WP_014614920.1 1698552..1699058(+) (ssbA) [Staphylococcus pseudintermedius strain VB88]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=301115 DNH96_RS08150 WP_014614920.1 1698552..1699058(+) (ssbA) [Staphylococcus pseudintermedius strain VB88]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.773 |
100 |
0.679 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.14 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.182 |
65.476 |
0.381 |