Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQ228_RS07945 Genome accession   NZ_CP030250
Coordinates   1549107..1550141 (-) Length   344 a.a.
NCBI ID   WP_408033493.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1544107..1555141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS07920 ilvD 1544359..1546077 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  DQ228_RS07925 - 1546190..1547371 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  DQ228_RS07935 trmB 1547607..1548248 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQ228_RS07940 ccrZ 1548258..1549049 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  DQ228_RS07945 pptB 1549107..1550141 (-) 1035 WP_408033493.1 ABC transporter permease Regulator
  DQ228_RS07950 pptA 1550141..1550872 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS07955 - 1550937..1551356 (+) 420 WP_011681530.1 HIT family protein -
  DQ228_RS07960 - 1551353..1551652 (+) 300 WP_014621895.1 hypothetical protein -
  DQ228_RS07965 - 1551704..1552432 (-) 729 WP_023909893.1 hypothetical protein -
  DQ228_RS07970 - 1552450..1553085 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  DQ228_RS10045 - 1553104..1553229 (-) 126 WP_011681534.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39974.45 Da        Isoelectric Point: 10.5243

>NTDB_id=300441 DQ228_RS07945 WP_408033493.1 1549107..1550141(-) (pptB) [Streptococcus thermophilus strain CS20]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=300441 DQ228_RS07945 WP_408033493.1 1549107..1550141(-) (pptB) [Streptococcus thermophilus strain CS20]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.837

100

0.988
  pptB Streptococcus salivarius strain HSISS4

93.314

100

0.933

Multiple sequence alignment