Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQ228_RS07950 Genome accession   NZ_CP030250
Coordinates   1550141..1550872 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain CS20     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545141..1555872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS07925 - 1546190..1547371 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  DQ228_RS07935 trmB 1547607..1548248 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQ228_RS07940 ccrZ 1548258..1549049 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  DQ228_RS07945 pptB 1549107..1550141 (-) 1035 WP_408033493.1 ABC transporter permease Regulator
  DQ228_RS07950 pptA 1550141..1550872 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS07955 - 1550937..1551356 (+) 420 WP_011681530.1 HIT family protein -
  DQ228_RS07960 - 1551353..1551652 (+) 300 WP_014621895.1 hypothetical protein -
  DQ228_RS07965 - 1551704..1552432 (-) 729 WP_023909893.1 hypothetical protein -
  DQ228_RS07970 - 1552450..1553085 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  DQ228_RS10045 - 1553104..1553229 (-) 126 WP_011681534.1 hypothetical protein -
  DQ228_RS07975 - 1553645..1555744 (-) 2100 WP_011681535.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=300442 DQ228_RS07950 WP_002951673.1 1550141..1550872(-) (pptA) [Streptococcus thermophilus strain CS20]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=300442 DQ228_RS07950 WP_002951673.1 1550141..1550872(-) (pptA) [Streptococcus thermophilus strain CS20]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment