Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQ228_RS07190 Genome accession   NZ_CP030250
Coordinates   1404169..1405095 (-) Length   308 a.a.
NCBI ID   WP_084828982.1    Uniprot ID   A0A0E2Q2N6
Organism   Streptococcus thermophilus strain CS20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399169..1410095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS07160 - 1399246..1400040 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  DQ228_RS07165 - 1400225..1400602 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DQ228_RS07170 - 1400607..1401305 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  DQ228_RS07175 - 1401317..1402102 (+) 786 WP_220016107.1 ABC transporter permease -
  DQ228_RS07180 amiF 1402152..1403081 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  DQ228_RS07185 amiE 1403074..1404159 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS07190 amiD 1404169..1405095 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  DQ228_RS07195 amiC 1405095..1406588 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  DQ228_RS07200 amiA3 1406649..1408619 (-) 1971 WP_064355565.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34664.83 Da        Isoelectric Point: 9.7054

>NTDB_id=300437 DQ228_RS07190 WP_084828982.1 1404169..1405095(-) (amiD) [Streptococcus thermophilus strain CS20]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIIGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=300437 DQ228_RS07190 WP_084828982.1 1404169..1405095(-) (amiD) [Streptococcus thermophilus strain CS20]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTGCTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTTTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAATGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCTCTCTTTATTA
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q2N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

99.026

100

0.99
  amiD Streptococcus thermophilus LMD-9

99.026

100

0.99
  amiD Streptococcus salivarius strain HSISS4

96.104

100

0.961

Multiple sequence alignment