Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQ228_RS07180 Genome accession   NZ_CP030250
Coordinates   1402152..1403081 (-) Length   309 a.a.
NCBI ID   WP_082245810.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397152..1408081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS07155 - 1398438..1399253 (-) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -
  DQ228_RS07160 - 1399246..1400040 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  DQ228_RS07165 - 1400225..1400602 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DQ228_RS07170 - 1400607..1401305 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  DQ228_RS07175 - 1401317..1402102 (+) 786 WP_220016107.1 ABC transporter permease -
  DQ228_RS07180 amiF 1402152..1403081 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  DQ228_RS07185 amiE 1403074..1404159 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS07190 amiD 1404169..1405095 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  DQ228_RS07195 amiC 1405095..1406588 (-) 1494 WP_064355564.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35143.27 Da        Isoelectric Point: 6.5989

>NTDB_id=300435 DQ228_RS07180 WP_082245810.1 1402152..1403081(-) (amiF) [Streptococcus thermophilus strain CS20]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=300435 DQ228_RS07180 WP_082245810.1 1402152..1403081(-) (amiF) [Streptococcus thermophilus strain CS20]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment