Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQ228_RS05570 Genome accession   NZ_CP030250
Coordinates   1077561..1078373 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain CS20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072561..1083373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS05545 - 1073499..1073885 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  DQ228_RS05550 - 1073977..1074855 (-) 879 Protein_1073 GNAT family N-acetyltransferase -
  DQ228_RS05555 yidA 1075063..1075872 (+) 810 WP_011226081.1 sugar-phosphatase -
  DQ228_RS05560 - 1075874..1077088 (+) 1215 WP_002953123.1 aminoacyltransferase -
  DQ228_RS05565 - 1077140..1077501 (-) 362 Protein_1076 YbaN family protein -
  DQ228_RS05570 vicX 1077561..1078373 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  DQ228_RS05575 vicK 1078379..1079719 (-) 1341 WP_232979732.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQ228_RS05580 vicR 1079712..1080419 (-) 708 WP_011681206.1 response regulator YycF Regulator
  DQ228_RS05585 - 1080946..1081713 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  DQ228_RS05590 - 1081725..1082558 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  DQ228_RS05595 - 1082576..1083274 (+) 699 WP_014608374.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=300427 DQ228_RS05570 WP_011681204.1 1077561..1078373(-) (vicX) [Streptococcus thermophilus strain CS20]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=300427 DQ228_RS05570 WP_011681204.1 1077561..1078373(-) (vicX) [Streptococcus thermophilus strain CS20]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment