Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ETK71_RS15270 Genome accession   NZ_CP035411
Coordinates   2926563..2927567 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM103622     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2921563..2932567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS15245 (ETK71_15245) acuA 2922490..2923122 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  ETK71_RS15250 (ETK71_15250) acuB 2923149..2923793 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  ETK71_RS15255 (ETK71_15255) acuC 2923790..2924953 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  ETK71_RS15260 (ETK71_15260) motS 2924964..2925692 (-) 729 WP_015714527.1 flagellar motor protein MotS -
  ETK71_RS15265 (ETK71_15265) motP 2925682..2926500 (-) 819 WP_015714528.1 flagellar motor protein MotP -
  ETK71_RS15270 (ETK71_15270) ccpA 2926563..2927567 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ETK71_RS15275 (ETK71_15275) aroX 2927843..2928919 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ETK71_RS15280 (ETK71_15280) ytxJ 2929155..2929481 (-) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  ETK71_RS15285 (ETK71_15285) ytxH 2929505..2929960 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ETK71_RS15290 (ETK71_15290) ytxG 2929991..2930413 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ETK71_RS15295 (ETK71_15295) murC 2930575..2931873 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=300421 ETK71_RS15270 WP_003229285.1 2926563..2927567(-) (ccpA) [Bacillus subtilis strain SRCM103622]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=300421 ETK71_RS15270 WP_003229285.1 2926563..2927567(-) (ccpA) [Bacillus subtilis strain SRCM103622]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment