Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQ228_RS02055 Genome accession   NZ_CP030250
Coordinates   380609..381052 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 375609..386052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS02035 - 376131..376883 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  DQ228_RS02040 - 376947..378053 (-) 1107 WP_024009756.1 AAA family ATPase -
  DQ228_RS02045 gdhA 378397..379749 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  DQ228_RS02050 - 380008..380418 (+) 411 WP_011680804.1 peptide deformylase -
  DQ228_RS02055 rcrR 380609..381052 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQ228_RS02060 rcrP 381056..382870 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS02065 rcrQ 382860..384638 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS02070 - 384794..385165 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=300414 DQ228_RS02055 WP_002945408.1 380609..381052(+) (rcrR) [Streptococcus thermophilus strain CS20]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=300414 DQ228_RS02055 WP_002945408.1 380609..381052(+) (rcrR) [Streptococcus thermophilus strain CS20]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment