Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQ228_RS02065 Genome accession   NZ_CP030250
Coordinates   382860..384638 (+) Length   592 a.a.
NCBI ID   WP_011225561.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 377860..389638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS02045 gdhA 378397..379749 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  DQ228_RS02050 - 380008..380418 (+) 411 WP_011680804.1 peptide deformylase -
  DQ228_RS02055 rcrR 380609..381052 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQ228_RS02060 rcrP 381056..382870 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS02065 rcrQ 382860..384638 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  DQ228_RS02070 - 384794..385165 (+) 372 WP_224103327.1 GNAT family acetyltransferase -
  DQ228_RS02075 - 385188..386352 (+) 1165 Protein_383 sensor histidine kinase -
  DQ228_RS02080 pyrH 386588..387325 (+) 738 WP_002949867.1 UMP kinase -
  DQ228_RS02085 frr 387340..387897 (+) 558 WP_002949868.1 ribosome recycling factor -
  DQ228_RS02090 cvfB 387988..388845 (+) 858 WP_014608029.1 RNA-binding virulence regulatory protein CvfB -
  DQ228_RS02095 - 388854..389069 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65120.17 Da        Isoelectric Point: 5.0166

>NTDB_id=300416 DQ228_RS02065 WP_011225561.1 382860..384638(+) (rcrQ) [Streptococcus thermophilus strain CS20]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=300416 DQ228_RS02065 WP_011225561.1 382860..384638(+) (rcrQ) [Streptococcus thermophilus strain CS20]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATTTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGGCAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment