Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQB68_RS16115 Genome accession   NZ_CP030172
Coordinates   3234765..3235361 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae subsp. pneumoniae strain 12208     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3229765..3240361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQB68_RS16100 (DQB68_16100) helD 3229973..3232027 (-) 2055 WP_004176653.1 DNA helicase IV -
  DQB68_RS16105 (DQB68_16105) - 3232152..3232598 (+) 447 WP_002898425.1 YccF domain-containing protein -
  DQB68_RS16110 (DQB68_16110) yccS 3232616..3234751 (+) 2136 WP_002898422.1 YccS family putative transporter -
  DQB68_RS16115 (DQB68_16115) sxy/tfoX 3234765..3235361 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  DQB68_RS16125 (DQB68_16125) sulA 3235710..3236219 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  DQB68_RS16130 (DQB68_16130) ompA 3236572..3237636 (+) 1065 WP_064278948.1 porin OmpA -
  DQB68_RS16135 (DQB68_16135) matP 3237768..3238220 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DQB68_RS16140 (DQB68_16140) - 3238406..3240163 (+) 1758 WP_032429922.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=299833 DQB68_RS16115 WP_004150836.1 3234765..3235361(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 12208]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=299833 DQB68_RS16115 WP_004150836.1 3234765..3235361(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 12208]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment