Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SPP_RS09915 Genome accession   NC_012467
Coordinates   1849810..1850709 (-) Length   299 a.a.
NCBI ID   WP_000904849.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844810..1855709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS09890 (SPP_2007) rsmA 1845460..1846332 (-) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  SPP_RS09895 (SPP_2008) - 1846583..1846876 (-) 294 Protein_1886 hypothetical protein -
  SPP_RS09900 (SPP_2009) - 1846869..1847510 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  SPP_RS09910 (SPP_2010) - 1847512..1849541 (-) 2030 Protein_1888 bacteriocin-associated integral membrane family protein -
  SPP_RS09915 (SPP_2012) comR 1849810..1850709 (-) 900 WP_000904849.1 helix-turn-helix transcriptional regulator Regulator
  SPP_RS09920 (SPP_2013) rnmV 1850781..1851341 (-) 561 WP_000660013.1 ribonuclease M5 -
  SPP_RS09925 (SPP_2014) - 1851341..1852114 (-) 774 WP_000575608.1 TatD family hydrolase -
  SPP_RS09930 (SPP_2015) - 1852419..1853390 (-) 972 Protein_1892 DUF1542 domain-containing protein -
  SPP_RS09935 (SPP_2016) rpmH 1853596..1853730 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  SPP_RS09940 (SPP_2017) - 1853875..1855089 (-) 1215 WP_000666471.1 pyridoxal phosphate-dependent aminotransferase -
  SPP_RS09945 (SPP_2018) - 1855245..1855538 (-) 294 WP_000977367.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35419.19 Da        Isoelectric Point: 4.7732

>NTDB_id=29938 SPP_RS09915 WP_000904849.1 1849810..1850709(-) (comR) [Streptococcus pneumoniae P1031]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=29938 SPP_RS09915 WP_000904849.1 1849810..1850709(-) (comR) [Streptococcus pneumoniae P1031]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365

Multiple sequence alignment