Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DPV67_RS12400 Genome accession   NZ_CP030106
Coordinates   2525038..2525856 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DA33382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2520038..2530856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPV67_RS12385 (DPV67_12385) pilE 2520257..2520682 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  DPV67_RS12390 (DPV67_12390) pilY2 2520679..2521161 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  DPV67_RS12395 (DPV67_12395) pilY1 2521172..2525026 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  DPV67_RS12400 (DPV67_12400) pilX 2525038..2525856 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DPV67_RS12405 (DPV67_12405) pilW 2525853..2526854 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  DPV67_RS12410 (DPV67_12410) pilV 2526855..2527415 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  DPV67_RS12415 (DPV67_12415) fimU 2527409..2527882 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DPV67_RS12420 (DPV67_12420) ispH 2528052..2529002 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DPV67_RS12425 (DPV67_12425) gmk 2529125..2529754 (+) 630 WP_000015937.1 guanylate kinase -
  DPV67_RS12430 (DPV67_12430) rpoZ 2529827..2530105 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DPV67_RS12435 (DPV67_12435) - 2530144..2530274 (+) 131 Protein_2432 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=299263 DPV67_RS12400 WP_000149374.1 2525038..2525856(-) (pilX) [Acinetobacter baumannii strain DA33382]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=299263 DPV67_RS12400 WP_000149374.1 2525038..2525856(-) (pilX) [Acinetobacter baumannii strain DA33382]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment