Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA10_RS22700 Genome accession   NZ_CP035397
Coordinates   724043..724726 (-) Length   227 a.a.
NCBI ID   WP_284691248.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 719043..729726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS03735 (ETA10_03735) - 719711..720544 (+) 834 WP_164907151.1 AbiJ-NTD4 domain-containing protein -
  ETA10_RS03740 (ETA10_03740) - 720840..722279 (+) 1440 WP_129110460.1 hypothetical protein -
  ETA10_RS03745 (ETA10_03745) - 722276..723376 (+) 1101 WP_129110461.1 hypothetical protein -
  ETA10_RS03750 (ETA10_03750) - 723856..724053 (-) 198 WP_129110462.1 hypothetical protein -
  ETA10_RS22700 rapC 724043..724726 (-) 684 WP_284691248.1 tetratricopeptide repeat protein Regulator
  ETA10_RS22705 rapC 724950..725177 (-) 228 WP_284691249.1 hypothetical protein Regulator
  ETA10_RS03760 (ETA10_03760) - 725358..725662 (-) 305 Protein_681 hypothetical protein -
  ETA10_RS03765 (ETA10_03765) yezA 725729..725935 (-) 207 WP_129110463.1 bacteriocin immunity protein -
  ETA10_RS03770 (ETA10_03770) - 726179..726649 (-) 471 WP_262091302.1 TIGR01741 family protein -
  ETA10_RS03775 (ETA10_03775) - 726728..727198 (-) 471 WP_129110464.1 immunity protein YezG family protein -
  ETA10_RS03780 (ETA10_03780) - 727188..727661 (-) 474 WP_129110465.1 antitoxin YezG family protein -
  ETA10_RS03785 (ETA10_03785) yeeF 727667..729676 (-) 2010 WP_129110466.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26532.70 Da        Isoelectric Point: 8.6476

>NTDB_id=299265 ETA10_RS22700 WP_284691248.1 724043..724726(-) (rapC) [Bacillus subtilis strain SRCM103773]
MKQTHVSMHYSSQAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNC
YLKMSELTKAAKYMEQSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDNLFKIMFEGLQALFI
QKGEASILLNIFNKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=299265 ETA10_RS22700 WP_284691248.1 724043..724726(-) (rapC) [Bacillus subtilis strain SRCM103773]
ATGAAACAAACCCACGTATCCATGCACTATTCTTCCCAGGCGTATAACATTTATAAAACGCACGACCTTTACTCAGTCCG
CCGCATACAATGCCATTTTGTAATCGCAGGAAACTACGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAAC
AGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAAACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGT
TATCTTAAAATGAGCGAATTGACGAAAGCAGCAAAATACATGGAGCAATCGATACTCCAATTCAAAAAATCAAATTTCAA
CAACTTGACACAAGCTTACCACGATTTAGCCTTAATTTATTTTCTTCAACATAAACAAGACCAAGCAATGGATTGTTTCA
GAAAAGGCGTACGCTTCGCATGTAAATTCGACGATAATCTATTTAAAATTATGTTTGAAGGATTACAGGCGCTGTTTATC
CAAAAAGGAGAAGCGTCCATTTTATTAAATATTTTCAACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTT
GGCATTATTAGCCGCAAAGTTTTATACTGAAATTGGACAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATG
CCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(37-98)

Tetratricopeptide repeat (TPR_8)

(111-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

36.404

100

0.366

Multiple sequence alignment