Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | DPV67_RS12385 | Genome accession | NZ_CP030106 |
| Coordinates | 2520257..2520682 (-) | Length | 141 a.a. |
| NCBI ID | WP_000788336.1 | Uniprot ID | A0A0J0ZME6 |
| Organism | Acinetobacter baumannii strain DA33382 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2515257..2525682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPV67_RS12355 (DPV67_12355) | - | 2515790..2516821 (+) | 1032 | WP_001189459.1 | lipase secretion chaperone | - |
| DPV67_RS12360 (DPV67_12360) | - | 2516936..2517877 (+) | 942 | WP_085916958.1 | lipase family alpha/beta hydrolase | - |
| DPV67_RS12365 (DPV67_12365) | rplS | 2517929..2518297 (-) | 369 | WP_000014562.1 | 50S ribosomal protein L19 | - |
| DPV67_RS12370 (DPV67_12370) | trmD | 2518505..2519245 (-) | 741 | WP_000464595.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DPV67_RS12375 (DPV67_12375) | rimM | 2519291..2519839 (-) | 549 | WP_000189236.1 | ribosome maturation factor RimM | - |
| DPV67_RS12380 (DPV67_12380) | rpsP | 2519859..2520110 (-) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| DPV67_RS12385 (DPV67_12385) | pilE | 2520257..2520682 (-) | 426 | WP_000788336.1 | type IV pilin protein | Machinery gene |
| DPV67_RS12390 (DPV67_12390) | pilY2 | 2520679..2521161 (-) | 483 | WP_001046489.1 | type IV pilin protein | Machinery gene |
| DPV67_RS12395 (DPV67_12395) | pilY1 | 2521172..2525026 (-) | 3855 | WP_000768943.1 | vWA domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15175.41 Da Isoelectric Point: 7.8144
>NTDB_id=299260 DPV67_RS12385 WP_000788336.1 2520257..2520682(-) (pilE) [Acinetobacter baumannii strain DA33382]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTAIPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTAIPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
Nucleotide
Download Length: 426 bp
>NTDB_id=299260 DPV67_RS12385 WP_000788336.1 2520257..2520682(-) (pilE) [Acinetobacter baumannii strain DA33382]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCAACTATACAATCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAATACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAGGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCAACTATACAATCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAATACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAGGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Acinetobacter baumannii D1279779 |
90.071 |
100 |
0.901 |
| comF | Acinetobacter baylyi ADP1 |
49.286 |
99.291 |
0.489 |