Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DOU34_RS15775 Genome accession   NZ_CP030097
Coordinates   3183833..3184522 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178833..3189522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS15740 - 3179030..3179512 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DOU34_RS15745 flgM 3179527..3179793 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DOU34_RS15750 - 3179863..3180282 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  DOU34_RS15755 comFC 3180356..3181045 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  DOU34_RS15760 - 3181051..3181335 (-) 285 WP_007407481.1 competence protein ComFB -
  DOU34_RS15765 comFA 3181393..3182778 (-) 1386 WP_061047045.1 DEAD/DEAH box helicase Machinery gene
  DOU34_RS15770 - 3182887..3183735 (-) 849 WP_061047044.1 DegV family protein -
  DOU34_RS15775 degU 3183833..3184522 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DOU34_RS15780 degS 3184599..3185762 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DOU34_RS15785 - 3185985..3186632 (+) 648 WP_007407485.1 YigZ family protein -
  DOU34_RS15790 - 3186637..3187857 (+) 1221 WP_039063727.1 LCP family protein -
  DOU34_RS15795 - 3187956..3189032 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=299144 DOU34_RS15775 WP_003219701.1 3183833..3184522(-) (degU) [Bacillus amyloliquefaciens strain SH-B74]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=299144 DOU34_RS15775 WP_003219701.1 3183833..3184522(-) (degU) [Bacillus amyloliquefaciens strain SH-B74]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment