Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPP_RS07590 Genome accession   NC_012467
Coordinates   1432047..1432769 (-) Length   240 a.a.
NCBI ID   WP_000506589.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427047..1437769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS07580 (SPP_1544) - 1429621..1430787 (-) 1167 WP_000521365.1 MalY/PatB family protein -
  SPP_RS07585 (SPP_1545) - 1430795..1431889 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  SPP_RS07590 (SPP_1546) rcrP 1432047..1432769 (-) 723 WP_000506589.1 ABC transporter ATP-binding protein Regulator
  SPP_RS07595 (SPP_1547) - 1432929..1434275 (+) 1347 WP_012677103.1 IS1380-like element ISSpn5 family transposase -
  SPP_RS12200 (SPP_1548) - 1434502..1435437 (-) 936 Protein_1469 ABC transporter ATP-binding protein -
  SPP_RS07610 (SPP_1550) amiA 1435609..1437567 (-) 1959 WP_000748884.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27080.93 Da        Isoelectric Point: 5.0452

>NTDB_id=29909 SPP_RS07590 WP_000506589.1 1432047..1432769(-) (rcrP) [Streptococcus pneumoniae P1031]
MGFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=29909 SPP_RS07590 WP_000506589.1 1432047..1432769(-) (rcrP) [Streptococcus pneumoniae P1031]
TTGGGGTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362

Multiple sequence alignment