Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ES968_RS14925 Genome accession   NZ_CP035395
Coordinates   2788577..2789581 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM103697     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783577..2794581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS14900 (ES968_14900) acuA 2784504..2785136 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  ES968_RS14905 (ES968_14905) acuB 2785163..2785807 (+) 645 WP_014480568.1 acetoin utilization AcuB family protein -
  ES968_RS14910 (ES968_14910) acuC 2785804..2786967 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  ES968_RS14915 (ES968_14915) motS 2786978..2787706 (-) 729 WP_095010602.1 flagellar motor protein MotS -
  ES968_RS14920 (ES968_14920) motP 2787696..2788514 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  ES968_RS14925 (ES968_14925) ccpA 2788577..2789581 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ES968_RS14930 (ES968_14930) aroX 2789857..2790933 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ES968_RS14935 (ES968_14935) ytxJ 2791170..2791496 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  ES968_RS14940 (ES968_14940) ytxH 2791520..2791975 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ES968_RS14945 (ES968_14945) ytxG 2792006..2792428 (-) 423 WP_024572894.1 DUF948 domain-containing protein -
  ES968_RS14950 (ES968_14950) murC 2792590..2793888 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=299081 ES968_RS14925 WP_003229285.1 2788577..2789581(-) (ccpA) [Bacillus subtilis strain SRCM103697]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=299081 ES968_RS14925 WP_003229285.1 2788577..2789581(-) (ccpA) [Bacillus subtilis strain SRCM103697]
ATGAGCAATATTACGATCTACGACGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGCGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGTCTCATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATCGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503