Detailed information NTG0299065

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DPH57_RS16405
• Genome accession: NZ_CP030092
• Coordinates: 3844350..3845774 (-)
• Length: 474 a.a.
• NCBI ID: WP_112938708.1
• Uniprot ID: A0A7U5Y059
• Organism: Massilia sp. YMA4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3839350..3850774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPH57_RS16395 (DPH57_16395)	-	3839553..3840665 (-)	1113	WP_112938706.1	ribonucleotide-diphosphate reductase subunit beta	-
DPH57_RS16400 (DPH57_16400)	-	3840859..3843804 (-)	2946	WP_112938707.1	ribonucleoside-diphosphate reductase subunit alpha	-
DPH57_RS16405 (DPH57_16405)	pilR	3844350..3845774 (-)	1425	WP_112938708.1	sigma-54 dependent transcriptional regulator	Regulator
DPH57_RS16410 (DPH57_16410)	-	3845804..3847483 (-)	1680	WP_227470222.1	PAS domain-containing sensor histidine kinase	-
DPH57_RS16415 (DPH57_16415)	-	3847499..3847756 (-)	258	WP_112938709.1	PP0621 family protein	-
DPH57_RS16420 (DPH57_16420)	-	3847753..3848556 (-)	804	WP_112938710.1	inner membrane protein YpjD	-
DPH57_RS16425 (DPH57_16425)	-	3848713..3849510 (-)	798	WP_112938711.1	ABC transporter ATP-binding protein	-
DPH57_RS16430 (DPH57_16430)	-	3849512..3850333 (-)	822	WP_112938712.1	ABC transporter permease	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 51072.71 Da
• Isoelectric Point: 5.0621

>NTDB_id=299065 DPH57_RS16405 WP_112938708.1 3844350..3845774(-) (pilR) [Massilia sp. YMA4]
MSSPRVLVVDDEDDLRELLEITLLKMGLDVDSAPDLRQARAHLAAGHEYGLVLTDMRLPDGLGLELVREVAASGRNTPIA
VVTAFGSTDNAVVALKAGAFDYVTKPVQLDQLRQLVQSALKLNGPAPAAPGESVDSRLKGQSAAMQALRAQIARLARSMA
PIAITGESGSGKELAAREIHAQSSRADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAAHGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLNVIELALPPLRERLDDLPVLT
EAILARLAAGGPPGVLGPGVLEALRGYSFPGNVRELENVLERALAFANDGVIHVEDLALKGARLVEAGQPEPVSMLAPAA
PAQALADEAPAGMPPLPDLTVLPSNLPEYLERVEREIIVRALAQTQYNRTQAAQLLGISFRQLRYQMQKLNIKE

Nucleotide

• Length: 1425 bp

>NTDB_id=299065 DPH57_RS16405 WP_112938708.1 3844350..3845774(-) (pilR) [Massilia sp. YMA4]
ATGAGTTCACCCCGGGTATTGGTCGTCGACGACGAAGACGACCTGCGCGAGCTGCTGGAAATCACGCTGCTGAAGATGGG
CCTGGACGTGGACAGTGCGCCCGACCTGCGCCAGGCGCGCGCCCACCTGGCGGCGGGGCACGAATACGGCCTGGTGCTGA
CCGACATGCGCCTGCCGGACGGCCTGGGGCTGGAACTGGTGCGCGAGGTGGCCGCCAGCGGGCGCAATACGCCGATCGCC
GTCGTCACGGCCTTCGGCAGCACGGACAACGCCGTCGTCGCGCTCAAAGCCGGCGCCTTCGACTATGTCACGAAACCGGT
GCAGCTGGACCAGTTGCGCCAGCTGGTGCAGTCGGCGCTGAAGCTGAACGGCCCGGCGCCGGCGGCGCCCGGGGAGTCGG
TGGATAGCCGCCTGAAGGGGCAGTCGGCCGCGATGCAGGCGCTGCGCGCGCAGATCGCACGGCTGGCGCGCTCGATGGCG
CCGATCGCCATCACGGGCGAATCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGAGATCCACGCCCAGAGCTCGCGCGCGGA
CAAGCCGTTCATCGCCGTCAACTGCGGCGCGATTCCCGAGGCGTTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CCTTCACGGGCGCGGCGGACGAGCGCGACGGCTTCTTCCAGGCCGCCCACGGCGGCACCTTGATGCTGGACGAGGTGGCG
GACCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACGGCCGA
GGAACCGGTGGACGTGCGCATCGTCAGCGCCACCCACCAGGACCTGGCCCGCTGTGTCGAGCAGGGCAAGTTCCGCCAGG
ACCTGTTCTACCGCCTGAACGTCATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGCCTGGACGACTTGCCTGTATTGACG
GAAGCGATCCTGGCGCGCCTGGCGGCGGGCGGGCCGCCGGGCGTGCTGGGGCCGGGCGTGCTGGAAGCGCTGCGCGGCTA
CAGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTCGCCAACGATGGCGTGATCCATG
TCGAGGACCTGGCGCTGAAGGGCGCGCGCCTGGTGGAAGCGGGTCAGCCTGAACCGGTTTCCATGCTGGCCCCGGCCGCG
CCGGCGCAGGCACTGGCGGACGAGGCGCCCGCCGGCATGCCGCCACTGCCGGACCTGACGGTGCTGCCGTCGAACCTGCC
GGAATACCTGGAACGGGTCGAGCGCGAGATCATCGTGCGCGCGCTGGCGCAGACGCAGTACAACCGCACCCAGGCGGCCC
AGCTGCTGGGGATCAGTTTCCGGCAGCTGCGTTACCAGATGCAGAAGCTCAACATCAAGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-116)

• Bacterial regulatory protein, Fis family (HTH_8) (430-470)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

3D structure

• AlphaFold DB: A0A7U5Y059

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	54.105	100	0.542
pilR	Acinetobacter baumannii strain A118	45.339	99.578	0.451