Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DN067_RS15725 Genome accession   NZ_CP030083
Coordinates   3270062..3270472 (-) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain Aba     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3265062..3275472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN067_RS15695 - 3265148..3265417 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  DN067_RS15700 rapZ 3265414..3266265 (-) 852 WP_000821671.1 RNase adapter RapZ -
  DN067_RS15705 panC 3266288..3267136 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  DN067_RS15710 panB 3267140..3267949 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  DN067_RS15715 folK 3267995..3268477 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DN067_RS15720 pcnB 3268474..3269937 (-) 1464 WP_001194207.1 polynucleotide adenylyltransferase PcnB -
  DN067_RS15725 comEA 3270062..3270472 (-) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  DN067_RS15730 mazG 3270441..3271247 (-) 807 WP_000359483.1 nucleoside triphosphate pyrophosphohydrolase -
  DN067_RS15735 - 3271359..3272132 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  DN067_RS15740 - 3272177..3274483 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=299005 DN067_RS15725 WP_002017231.1 3270062..3270472(-) (comEA) [Acinetobacter baumannii strain Aba]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=299005 DN067_RS15725 WP_002017231.1 3270062..3270472(-) (comEA) [Acinetobacter baumannii strain Aba]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment