Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ES965_RS15265 Genome accession   NZ_CP035391
Coordinates   2913723..2914727 (-) Length   334 a.a.
NCBI ID   WP_017695488.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103689     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2908723..2919727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS15240 (ES965_15240) acuA 2909650..2910282 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  ES965_RS15245 (ES965_15245) acuB 2910309..2910953 (+) 645 WP_124058857.1 acetoin utilization AcuB family protein -
  ES965_RS15250 (ES965_15250) acuC 2910950..2912113 (+) 1164 WP_124058859.1 acetoin utilization protein AcuC -
  ES965_RS15255 (ES965_15255) motS 2912124..2912852 (-) 729 WP_122895529.1 flagellar motor protein MotS -
  ES965_RS15260 (ES965_15260) motP 2912842..2913660 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  ES965_RS15265 (ES965_15265) ccpA 2913723..2914727 (-) 1005 WP_017695488.1 catabolite control protein A Regulator
  ES965_RS15270 (ES965_15270) aroX 2915003..2916079 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ES965_RS15275 (ES965_15275) ytxJ 2916315..2916641 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  ES965_RS15280 (ES965_15280) ytxH 2916665..2917120 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ES965_RS15285 (ES965_15285) ytxG 2917151..2917573 (-) 423 WP_024572894.1 DUF948 domain-containing protein -
  ES965_RS15290 (ES965_15290) murC 2917735..2919033 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36970.36 Da        Isoelectric Point: 5.0249

>NTDB_id=298776 ES965_RS15265 WP_017695488.1 2913723..2914727(-) (ccpA) [Bacillus subtilis strain SRCM103689]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMTEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=298776 ES965_RS15265 WP_017695488.1 2913723..2914727(-) (ccpA) [Bacillus subtilis strain SRCM103689]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATTGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCTGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGACAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCTATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATCGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503