Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DOM24_RS11650 Genome accession   NZ_CP030031
Coordinates   2481169..2481552 (-) Length   127 a.a.
NCBI ID   WP_005018759.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2476169..2486552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS11635 (DOM24_11635) - 2478111..2480192 (-) 2082 WP_111282221.1 methyl-accepting chemotaxis protein -
  DOM24_RS11640 (DOM24_11640) - 2480238..2480774 (-) 537 WP_005018769.1 chemotaxis protein CheW -
  DOM24_RS11645 (DOM24_11645) - 2480779..2481147 (-) 369 WP_005018768.1 response regulator -
  DOM24_RS11650 (DOM24_11650) pilG 2481169..2481552 (-) 384 WP_005018759.1 twitching motility response regulator PilG Regulator
  DOM24_RS11655 (DOM24_11655) - 2481890..2482471 (+) 582 WP_111282223.1 hypothetical protein -
  DOM24_RS11660 (DOM24_11660) - 2482533..2483660 (+) 1128 WP_111282225.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14269.38 Da        Isoelectric Point: 4.7278

>NTDB_id=298581 DOM24_RS11650 WP_005018759.1 2481169..2481552(-) (pilG) [Acinetobacter radioresistens strain LH6]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=298581 DOM24_RS11650 WP_005018759.1 2481169..2481552(-) (pilG) [Acinetobacter radioresistens strain LH6]
ATGGAAGACAAATTTCAAAACCTTAAGGTTATGGTAATCGATGATTCAAAAACTATTCGCCGTACAGCAGAAACTTTGCT
GCAACGTGAGGGCTGTGAGGTAATTACCGCAGTTGATGGTTTTGAAGCATTGTCCAAGATTGCCGAAGCCAATCCTGATA
TTGTCTTTGTCGATATCATGATGCCGCGTCTAGATGGTTACCAGACCTGTGCACTGATTAAAAACTCACAAAATTATCAG
AATATACCGGTCATTATGCTGTCTAGTAAAGATGGGCTATTTGATCAGGCTAAAGGTCGTGTAGTGGGTTCGGATGAATA
TCTGACCAAACCGTTTAGTAAAGACGAATTGCTCAATGCAATACGTAATCATGTCAGTGTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

99.206

99.213

0.984
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment