Detailed information NTG0298573

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: DOM24_RS05335
• Genome accession: NZ_CP030031
• Coordinates: 1156000..1156635 (+)
• Length: 211 a.a.
• NCBI ID: WP_005405646.1
• Uniprot ID: -
• Organism: Acinetobacter radioresistens strain LH6
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1151000..1161635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOM24_RS05300 (DOM24_05300)	kdsB	1151462..1152223 (+)	762	WP_111280916.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DOM24_RS05305 (DOM24_05305)	-	1152241..1153224 (+)	984	WP_111280918.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
DOM24_RS05310 (DOM24_05310)	-	1153243..1153584 (+)	342	WP_005014707.1	PilZ domain-containing protein	-
DOM24_RS05315 (DOM24_05315)	-	1153628..1154401 (+)	774	WP_111280920.1	TatD family hydrolase	-
DOM24_RS05320 (DOM24_05320)	-	1154441..1155049 (+)	609	WP_101162145.1	TetR/AcrR family transcriptional regulator	-
DOM24_RS05325 (DOM24_05325)	-	1155064..1155627 (+)	564	WP_111280922.1	type II secretion system protein	-
DOM24_RS05330 (DOM24_05330)	xcpV	1155617..1156003 (+)	387	WP_111280924.1	type II secretion system minor pseudopilin GspI	Machinery gene
DOM24_RS05335 (DOM24_05335)	xcpW	1156000..1156635 (+)	636	WP_005405646.1	type II secretion system minor pseudopilin GspJ	Machinery gene
DOM24_RS05340 (DOM24_05340)	gspK	1156659..1157606 (+)	948	WP_111280926.1	type II secretion system minor pseudopilin GspK	-
DOM24_RS05345 (DOM24_05345)	-	1157703..1158299 (+)	597	WP_111280928.1	6-carboxytetrahydropterin synthase	-
DOM24_RS05350 (DOM24_05350)	ung	1158344..1159057 (+)	714	WP_005014692.1	uracil-DNA glycosylase	-
DOM24_RS05355 (DOM24_05355)	-	1159054..1160178 (+)	1125	WP_111280930.1	enoyl-CoA hydratase/isomerase family protein	-
DOM24_RS05360 (DOM24_05360)	tadA	1160182..1160673 (+)	492	WP_005014690.1	tRNA adenosine(34) deaminase TadA	-
DOM24_RS05365 (DOM24_05365)	-	1160756..1161190 (+)	435	WP_005014689.1	SRPBCC family protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24128.55 Da
• Isoelectric Point: 5.8366

>NTDB_id=298573 DOM24_RS05335 WP_005405646.1 1156000..1156635(+) (xcpW) [Acinetobacter radioresistens strain LH6]
MKYKRGFTLVELLVAIAIFAALSALGWKVFDYLIKVKERNSIHEQNLARLQEAYQQILRDSLQLIPLTANNGGELRPALE
LNDQHFIFSKAGVTDPLGQGLGPYERIEYQYSSADQKLYRLKYQNLNTSTAIQPQSSVLLDQVEQYRISVLNPAELNRWP
ESVLDPASQSEQLKILPRGFKINLTINGTEYEWIYSLLNTDDLKEKIINPS

Nucleotide

• Length: 636 bp

>NTDB_id=298573 DOM24_RS05335 WP_005405646.1 1156000..1156635(+) (xcpW) [Acinetobacter radioresistens strain LH6]
ATGAAATATAAACGGGGTTTTACTCTGGTGGAGCTGTTGGTCGCGATTGCGATTTTTGCAGCACTTTCTGCGCTGGGTTG
GAAGGTCTTTGATTATCTGATCAAAGTAAAAGAACGAAATAGTATACATGAGCAAAATCTTGCCCGGTTACAGGAAGCTT
ATCAGCAAATCTTACGTGACAGCCTGCAGCTGATTCCATTAACTGCAAATAATGGAGGAGAGTTGCGTCCTGCACTTGAA
TTAAACGATCAGCATTTTATTTTTAGTAAAGCTGGTGTAACTGATCCTTTGGGCCAGGGGCTGGGGCCTTATGAGCGGAT
CGAATATCAATACAGTAGTGCAGACCAGAAACTGTACCGGTTAAAATATCAAAACCTGAATACTTCAACTGCTATTCAGC
CCCAGTCAAGTGTGCTTCTTGATCAGGTTGAGCAATACCGGATTAGCGTCTTAAATCCGGCTGAACTGAACAGATGGCCT
GAAAGCGTATTAGATCCTGCTTCCCAATCAGAACAGCTTAAAATTCTACCGCGTGGTTTTAAGATCAATCTGACCATAAA
TGGAACTGAATACGAATGGATTTACAGCCTTTTAAATACAGATGATTTAAAAGAAAAAATAATAAATCCATCTTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

• Type II secretion system (T2SS), protein J (T2SSJ) (59-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	65.657	93.839	0.616