Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DOM24_RS00775 Genome accession   NZ_CP030031
Coordinates   170397..171812 (-) Length   471 a.a.
NCBI ID   WP_111280144.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 165397..176812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00760 (DOM24_00760) lptG 166450..167520 (+) 1071 WP_005022957.1 LPS export ABC transporter permease LptG -
  DOM24_RS00765 (DOM24_00765) gpmI 167639..169189 (+) 1551 WP_111280140.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  DOM24_RS00770 (DOM24_00770) - 169209..170396 (+) 1188 WP_111280142.1 S41 family peptidase -
  DOM24_RS00775 (DOM24_00775) pilR 170397..171812 (-) 1416 WP_111280144.1 sigma-54 dependent transcriptional regulator Regulator
  DOM24_RS00780 (DOM24_00780) pilS 171837..173402 (-) 1566 WP_111280146.1 PAS domain-containing sensor histidine kinase Regulator
  DOM24_RS00785 (DOM24_00785) - 173417..174052 (-) 636 WP_005017150.1 response regulator -
  DOM24_RS00790 (DOM24_00790) pbpG 174271..175302 (+) 1032 WP_147392469.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  DOM24_RS00795 (DOM24_00795) thrC 175390..176535 (-) 1146 WP_034683667.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52948.96 Da        Isoelectric Point: 6.1946

>NTDB_id=298556 DOM24_RS00775 WP_111280144.1 170397..171812(-) (pilR) [Acinetobacter radioresistens strain LH6]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVQYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLAQLQSAPLRNVQNFVAGQINHE
PLTDQVIPLSPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=298556 DOM24_RS00775 WP_111280144.1 170397..171812(-) (pilR) [Acinetobacter radioresistens strain LH6]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAAGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGGACCCACATTGCACATGGACTGGAGCAGGCAAAAAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCAGTATGTTTCACAACTTTATCCTTGTACACCGATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGAGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACACCTCAATCGGCTCAGCAACTGGTTCAGGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGCTCA
CAGGCACCTGTTTTTATTACTGGTGAATCCGGTACAGGCAAGGAAGTAGTGGCTAATCTGGTGCATCGCTTAAGTAACCG
CAGTGATGGTCCATTTATTGCTATTAACTGTGGCGCTATTCCAGGCGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AAGGAAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGCGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTGGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTAGAAATACTGGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCCCCCCTACGTGAACGTGAAGATGACATTCTTCTG
CTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGAAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTAGCCCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTCATTCCATTGAGCCCTCACAGGAAAATTCCTGCTGAAGGCCTGGAGCAGTATCTTGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.401

99.575

0.482

Multiple sequence alignment