Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DOM24_RS00780 Genome accession   NZ_CP030031
Coordinates   171837..173402 (-) Length   521 a.a.
NCBI ID   WP_111280146.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 166837..178402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS00765 (DOM24_00765) gpmI 167639..169189 (+) 1551 WP_111280140.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  DOM24_RS00770 (DOM24_00770) - 169209..170396 (+) 1188 WP_111280142.1 S41 family peptidase -
  DOM24_RS00775 (DOM24_00775) pilR 170397..171812 (-) 1416 WP_111280144.1 sigma-54 dependent transcriptional regulator Regulator
  DOM24_RS00780 (DOM24_00780) pilS 171837..173402 (-) 1566 WP_111280146.1 PAS domain-containing sensor histidine kinase Regulator
  DOM24_RS00785 (DOM24_00785) - 173417..174052 (-) 636 WP_005017150.1 response regulator -
  DOM24_RS00790 (DOM24_00790) pbpG 174271..175302 (+) 1032 WP_147392469.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  DOM24_RS00795 (DOM24_00795) thrC 175390..176535 (-) 1146 WP_034683667.1 threonine synthase -
  DOM24_RS00800 (DOM24_00800) - 176593..177897 (-) 1305 WP_005022971.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59287.16 Da        Isoelectric Point: 5.8098

>NTDB_id=298557 DOM24_RS00780 WP_111280146.1 171837..173402(-) (pilS) [Acinetobacter radioresistens strain LH6]
MAPLRPASLLQTIYRLGEWYSAYRLVLALSLNIIFALTLETVAQDYQHPDLYFYSIVGYALICCIQLIFYKILPFEISKQ
LILLFIVDVCCFSLLNFALGGPNLHLSLLFVVTVFAATILLRPQLALIITLVAVISVIYQQVVGSFFNSSHLNSISNSAL
LAFLFFVMYGIGQIAVQRFRLLENLNFYQSIELNQLQNINRAILEQIDVGYLVLDEQQQVILNNPAACSLLGIPPIFTDE
KYFLRKLQPDLYTLIRFSDLKDGERFLFESQLSPYSVDIQVQKLLVPHQALTLLILQDAQKIKQQVQQLKLMALGQLSAS
IAHEIRNPLAAIVQANELLADSQPEQLQMLTGMIDRQSQRIDKIIHDTLNMARNSPTEPAKIRLSGFLAQVLNEDLIDIK
QAVQLQIEQDIWIYFDELQLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQLFKPFFSTE
INGTGLGLYLSHSFCEANHAKLTYVKQQQGACFRIECSIIY

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=298557 DOM24_RS00780 WP_111280146.1 171837..173402(-) (pilS) [Acinetobacter radioresistens strain LH6]
ATGGCCCCCCTACGCCCCGCCTCGCTGCTTCAGACCATCTACCGTCTGGGAGAGTGGTACAGTGCTTATCGTCTTGTTTT
AGCACTTAGTCTTAATATTATTTTTGCACTAACCCTTGAGACTGTTGCTCAAGACTACCAGCATCCTGACCTGTACTTTT
ATAGTATTGTCGGTTATGCCCTGATCTGCTGCATCCAGCTGATTTTTTATAAAATTCTACCTTTTGAAATTTCGAAGCAG
CTTATTTTACTCTTTATAGTAGATGTATGCTGTTTTAGCCTGCTAAATTTTGCACTGGGTGGACCCAATCTGCACTTAAG
TCTACTTTTTGTGGTGACGGTCTTTGCCGCAACAATTTTACTCAGGCCGCAGCTTGCTTTAATTATCACACTGGTCGCTG
TAATTAGTGTGATTTACCAGCAGGTAGTAGGAAGTTTTTTTAACAGCTCCCATCTCAACAGTATCAGTAATAGTGCTTTA
TTAGCTTTTTTATTTTTTGTGATGTATGGCATTGGACAGATTGCTGTACAGCGGTTTCGCCTTTTGGAAAACCTGAATTT
TTATCAGTCCATTGAGCTTAACCAGCTACAGAATATTAACCGGGCTATTTTGGAGCAAATTGATGTAGGCTATTTAGTTT
TAGATGAGCAGCAGCAGGTGATTTTAAATAATCCGGCAGCCTGTTCATTACTAGGTATTCCACCGATTTTTACTGATGAA
AAGTATTTTCTACGTAAACTCCAGCCAGACCTGTATACGCTTATCCGGTTTAGTGACTTAAAAGATGGTGAAAGGTTCCT
GTTTGAATCGCAGCTTTCACCTTACAGTGTCGATATACAGGTTCAGAAACTTCTTGTGCCTCATCAAGCTTTAACCTTGT
TGATATTGCAGGATGCCCAGAAAATCAAGCAGCAAGTACAACAATTAAAACTGATGGCACTAGGACAGCTTTCGGCCAGT
ATTGCCCATGAAATTCGTAATCCTTTGGCAGCTATTGTTCAGGCTAATGAGTTATTAGCTGACAGCCAGCCAGAACAGTT
GCAGATGCTCACAGGCATGATTGACCGGCAGTCACAACGTATTGACAAGATTATCCATGATACCTTGAATATGGCACGTA
ACAGTCCGACTGAGCCTGCTAAAATCAGATTATCAGGTTTTCTTGCCCAAGTTTTAAATGAAGACCTGATCGATATAAAA
CAGGCTGTACAGCTACAGATTGAGCAGGATATCTGGATTTATTTTGATGAACTCCAGCTACGTCAAGTGCTTATTAATCT
GATCCGTAATGCATTAAGGCATAATTCAGCAGAGCAGTCTTTTATTATTATACGGGTACATGGCACAGAAGAACGCGGCT
GGATTGATGTTATTGATTTTGGTCAAGGCGTAGCAGAGCGCGATATTTCACAATTGTTTAAACCCTTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTATATTTATCTCACAGTTTTTGTGAGGCTAATCATGCAAAACTTACTTATGTCAAGCA
ACAACAAGGCGCATGTTTTCGAATCGAATGCTCCATTATTTATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

62.791

99.04

0.622

Multiple sequence alignment