Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ERO09_RS05940 Genome accession   NZ_CP035368
Coordinates   1205663..1207699 (-) Length   678 a.a.
NCBI ID   WP_128787444.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200663..1212699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS05925 (ERO09_05920) - 1201684..1202601 (-) 918 WP_172622036.1 lysine exporter LysO family protein -
  ERO09_RS05930 (ERO09_05925) aroG 1202725..1203816 (-) 1092 WP_049357471.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  ERO09_RS05935 (ERO09_05930) - 1204231..1205622 (+) 1392 WP_128787443.1 DegQ family serine endoprotease -
  ERO09_RS05940 (ERO09_05935) uvrB 1205663..1207699 (-) 2037 WP_128787444.1 excinuclease ABC subunit UvrB Machinery gene
  ERO09_RS05950 (ERO09_05945) - 1208307..1209080 (-) 774 WP_128787445.1 TIGR01619 family protein -
  ERO09_RS05955 (ERO09_05950) xthA 1209090..1209893 (-) 804 WP_128787446.1 exodeoxyribonuclease III -
  ERO09_RS05960 (ERO09_05955) - 1210032..1211342 (+) 1311 WP_049357499.1 sodium:proton antiporter -
  ERO09_RS05965 (ERO09_05960) - 1211331..1212026 (-) 696 WP_128788018.1 TIGR01621 family pseudouridine synthase -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 77378.98 Da        Isoelectric Point: 5.0018

>NTDB_id=298397 ERO09_RS05940 WP_128787444.1 1205663..1207699(-) (uvrB) [Haemophilus parainfluenzae strain LC_1315_18]
MAEKINTKPFILHSDFKPSGDQPQAIEKLVENLEDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTSF
GAVPRFTVYPKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGTEIVDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SMTKSMEKAITETNRRREKQMKYNEEKGIVPQALNKKVGELLDIGQGANQKAKSKQRGKTAAEPTALYNAPKSAKEFQQQ
IKKLEQQMYKFAQDLEFEKAAAVRDQLHQLREQFMISE

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=298397 ERO09_RS05940 WP_128787444.1 1205663..1207699(-) (uvrB) [Haemophilus parainfluenzae strain LC_1315_18]
ATGGCAGAGAAAATTAATACTAAGCCTTTTATCCTTCATTCTGATTTTAAACCTTCCGGTGATCAACCCCAAGCAATCGA
AAAATTAGTTGAAAATTTAGAGGATGGTTTGGCCCATCAAACCCTTCTAGGGGTAACGGGGTCAGGCAAAACATTTACCA
TTGCAAATGTCATAGCGACATTAAATCGTCCAGCGATGCTACTTGCCCCAAATAAAACTCTCGCTGCTCAGCTTTATGCA
GAAATGAAAGCATTCTTTCCTGAAAATGCGGTGGAATATTTCGTCTCATACTATGATTATTATCAGCCGGAGGCTTATGT
GCCGAGTAGTGATACCTTTATCGAGAAAGATGCTTCAATTAATGATCAAATTGAACAGATGCGGCTTTCAGCTACCAAGT
CGTTCTTAGAGCGTCGAGATACTATCGTAGTCGCATCTGTTTCGGCAATTTATGGTTTGGGAGACCCTGATAGCTATTTG
CAAATGATGTTGCATTTACAACAAGGGGCCATTATCGATCAACGTCAGATTTTAGCGAAGTTAGCGGAATTACAATATAC
AAGAAACGATCAGGCTTTTCAGCGTGGTACATTCCGTGTTCGCGGCGAAGTGATTGATATTTTCCCTGCGGAATCTGACG
ATCGAGCGGTACGAATTGAATTATTTGATGATGAAATTGAACGTTTAAGTTTATTTGATCCTTTAACTGGCACAAGTTTT
GGTGCAGTTCCGCGTTTTACGGTGTATCCGAAAACCCACTATGTGACGCCAAGAGAGCGTATTTTAGATGCCATTGAAAA
AATCAAAGCGGAGCTTGTGCAACGCCGTGAATATTTCATCAAGGAACATAAATTGCTGGAAGAGCAGCGTATTACTCAAC
GTACACAATTTGATATTGAGATGATGAATGAGCTCGGTTATTGCTCAGGAATCGAAAACTATTCACGTTACCTTTCTGGC
AGAAATGAAGGTGAACCGCCTCCGACATTATTTGATTATATGCCGTCTGATGCGATTTTGATTATTGATGAATCACACGT
GACTGTGCCGCAAATTGGCGGGATGTATCGTGGTGACCGTTCACGTAAAGAAACCTTGGTGGAATATGGTTTCCGTTTGC
CTTCAGCATTGGATAACCGTCCATTACGCTTTGAAGAGTTTGAACGTTTAGCGCCGCAGACGATTTACGTTTCCGCAACA
CCAGGCCCTTATGAGTTAGAAAAATCAGGAACTGAAATAGTTGATCAGGTGGTACGTCCAACAGGCTTACTCGATCCGCA
AATTGAAATTCGTCCAGTATCCATTCAAGTAGATGATTTACTGTCAGAAGCTCGCCAAAGAGCGGATAAAAATGAGCGTG
TTTTAGTCACCACGCTAACGAAGAAAATGGCGGAAGATTTAACGGATTACTTAGACGAACACGGCATTCGTGTGCGTTAT
TTGCATTCAGATATTGATACGGTTGAGCGTGTAGAGATTATTCGTGATTTACGTTTAGGCGAGTTTGATGTGTTGGTCGG
TATCAACTTGTTGCGTGAGGGCTTAGATATTCCAGAAGTTTCTCTTGTCGCCATTTTAGATGCGGATAAAGAAGGTTTCT
TGCGTTCTGAGCGTTCTTTAATCCAAACCATCGGTCGAGCCGCTCGAAACTTGAACGGTAAAGCGATTTTGTATGCTGAT
AGCATGACTAAATCTATGGAAAAAGCCATTACCGAAACGAATCGCCGTCGTGAAAAACAAATGAAATACAATGAAGAAAA
GGGTATTGTTCCACAGGCATTGAATAAGAAAGTCGGTGAGTTATTAGATATTGGTCAAGGTGCAAATCAAAAAGCCAAAT
CGAAACAACGTGGAAAAACGGCGGCTGAACCGACCGCACTTTATAATGCGCCTAAATCAGCTAAAGAATTCCAACAACAA
ATTAAGAAATTGGAACAACAAATGTATAAATTTGCTCAAGATCTCGAGTTTGAAAAAGCCGCCGCAGTACGCGATCAGCT
TCATCAATTGAGAGAGCAGTTTATGATATCGGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(639-673)

Type III restriction enzyme, res subunit (ResIII)

(17-102)

Ultra-violet resistance protein B (UvrB)

(557-598)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.122

98.968

0.575
  uvrB Streptococcus pneumoniae R6

58.122

98.968

0.575
  uvrB Streptococcus pneumoniae D39

58.122

98.968

0.575