Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   ERO09_RS00390 Genome accession   NZ_CP035368
Coordinates   82021..82533 (+) Length   170 a.a.
NCBI ID   WP_128786782.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 77021..87533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS00375 (ERO09_00380) - 77031..78344 (+) 1314 WP_128786781.1 MFS transporter -
  ERO09_RS00380 (ERO09_00385) - 78468..81086 (-) 2619 WP_126470285.1 penicillin-binding protein 1A -
  ERO09_RS00385 (ERO09_00390) comA 81186..82028 (+) 843 WP_049357171.1 pilus assembly protein PilM Machinery gene
  ERO09_RS00390 (ERO09_00395) comB 82021..82533 (+) 513 WP_128786782.1 competence protein ComB Machinery gene
  ERO09_RS00395 (ERO09_00400) comC 82605..83072 (+) 468 WP_253257859.1 competence protein ComC Machinery gene
  ERO09_RS00400 (ERO09_00405) - 83072..83455 (+) 384 WP_128786783.1 pilus assembly protein PilP -
  ERO09_RS00405 (ERO09_00410) comE 83457..84842 (+) 1386 WP_128786784.1 type IV pilus secretin PilQ Machinery gene
  ERO09_RS00410 (ERO09_00415) - 84862..85551 (+) 690 WP_049357180.1 ComF family protein -
  ERO09_RS00415 (ERO09_00420) nfuA 85665..86249 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20250.47 Da        Isoelectric Point: 5.2160

>NTDB_id=298362 ERO09_RS00390 WP_128786782.1 82021..82533(+) (comB) [Haemophilus parainfluenzae strain LC_1315_18]
MFSLNLLPWRLEQHQKAFRLFMWQSLIWLVCSVLIFLGLSQLNTQQLQVLNQIKENLIQITNQVHQKRIQVQQLQRDLKE
MNELTEMDTEYVYRMLNLLSELPLQQGELDEFTLNAKQVVLSGMTESQKEFEAIHQFLKQHFTTVNLTKLEPVQSQLFFQ
FDIQLSEPVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=298362 ERO09_RS00390 WP_128786782.1 82021..82533(+) (comB) [Haemophilus parainfluenzae strain LC_1315_18]
ATGTTTAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCTTTTCGTCTTTTTATGTGGCAAAGTTTAAT
TTGGCTCGTTTGCTCAGTATTGATTTTTTTGGGATTGAGCCAACTTAACACACAACAATTGCAAGTTCTAAATCAGATAA
AAGAAAATCTGATACAGATAACGAATCAAGTTCATCAAAAACGCATTCAAGTTCAACAACTACAACGAGACTTGAAAGAA
ATGAATGAACTGACTGAAATGGATACAGAATATGTGTATCGCATGCTTAATTTATTAAGTGAGCTACCATTACAACAAGG
CGAGTTAGATGAATTTACGCTCAATGCTAAGCAAGTTGTGCTTTCAGGGATGACAGAAAGCCAAAAAGAATTTGAAGCGA
TACATCAATTTCTTAAACAGCATTTTACAACGGTTAATTTGACCAAGCTTGAACCAGTACAAAGTCAGTTATTCTTTCAA
TTTGATATTCAGTTATCGGAGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.741

95.294

0.388
  comB Haemophilus influenzae Rd KW20

40.741

95.294

0.388