Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | APJL_RS04370 | Genome accession | NC_010278 |
| Coordinates | 985967..986413 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae serovar 3 str. JL03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 980967..991413
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APJL_RS04345 (APJL_0887) | yacG | 981874..982062 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| APJL_RS04350 (APJL_0888) | coaE | 982044..982682 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| APJL_RS04355 (APJL_0889) | - | 982704..983342 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| APJL_RS04360 (APJL_0890) | pilC | 983369..984571 (-) | 1203 | WP_012263006.1 | type II secretion system F family protein | Machinery gene |
| APJL_RS04365 (APJL_0891) | pilB | 984555..985949 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| APJL_RS04370 (APJL_0892) | pilA | 985967..986413 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| APJL_RS04375 (APJL_0893) | radA | 986595..987974 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| APJL_RS04380 (APJL_0894) | - | 988018..988251 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| APJL_RS04385 (APJL_0895) | folA | 988378..988866 (-) | 489 | WP_012263007.1 | type 3 dihydrofolate reductase | - |
| APJL_RS04390 (APJL_0896) | proB | 988953..990044 (+) | 1092 | WP_012263008.1 | glutamate 5-kinase | - |
| APJL_RS04395 (APJL_0897) | - | 990057..990833 (+) | 777 | WP_012263009.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=29832 APJL_RS04370 WP_005597397.1 985967..986413(-) (pilA) [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=29832 APJL_RS04370 WP_005597397.1 985967..986413(-) (pilA) [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
GGGGAATCTGCAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
GGGGAATCTGCAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |