Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   A7J09_RS08325 Genome accession   NZ_CP030015
Coordinates   1722407..1723411 (-) Length   334 a.a.
NCBI ID   WP_002935813.1    Uniprot ID   A0A0K2E7G3
Organism   Streptococcus suis strain ISU2812     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1717038..1731652 1722407..1723411 within 0


Gene organization within MGE regions


Location: 1717038..1731652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS08305 (A7J09_08465) - 1717038..1717412 (-) 375 WP_004298835.1 hypothetical protein -
  A7J09_RS08310 (A7J09_08470) - 1717427..1718740 (-) 1314 WP_029178652.1 glycosyltransferase family 4 protein -
  A7J09_RS08315 (A7J09_08475) - 1718741..1719739 (-) 999 WP_024394421.1 glycosyltransferase family 4 protein -
  A7J09_RS08320 (A7J09_08480) - 1720056..1721975 (+) 1920 WP_053861562.1 Spy0128 family protein -
  A7J09_RS08325 (A7J09_08485) ccpA 1722407..1723411 (-) 1005 WP_002935813.1 catabolite control protein A Regulator
  A7J09_RS08330 (A7J09_08490) - 1723619..1724698 (+) 1080 WP_029178650.1 M24 family metallopeptidase -
  A7J09_RS08335 (A7J09_08500) - 1724954..1725370 (-) 417 WP_024382209.1 PTS sugar transporter subunit IIA -
  A7J09_RS08340 (A7J09_08505) - 1725383..1726201 (-) 819 WP_014636433.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  A7J09_RS08345 (A7J09_08510) - 1726194..1726979 (-) 786 WP_029178649.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  A7J09_RS08350 (A7J09_08515) - 1726995..1727474 (-) 480 WP_023369675.1 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB -
  A7J09_RS08355 (A7J09_08520) - 1727476..1729551 (-) 2076 WP_014636436.1 TIM-barrel domain-containing protein -
  A7J09_RS08360 (A7J09_08525) - 1729580..1731637 (-) 2058 WP_029178648.1 TIM-barrel domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36772.94 Da        Isoelectric Point: 5.5173

>NTDB_id=298272 A7J09_RS08325 WP_002935813.1 1722407..1723411(-) (ccpA) [Streptococcus suis strain ISU2812]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=298272 A7J09_RS08325 WP_002935813.1 1722407..1723411(-) (ccpA) [Streptococcus suis strain ISU2812]
ATGTTAAACACTGATGATACGGTTACGATTTACGATGTCGCCCGTGAAGCTGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCAA
ATGCTGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAACGGTGTCAGTGATATGGGCGTCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATACGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E7G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.18

99.701

0.799
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

99.701

0.793
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

59.215

99.102

0.587

Multiple sequence alignment