Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   A7J09_RS08255 Genome accession   NZ_CP030015
Coordinates   1707839..1709188 (-) Length   449 a.a.
NCBI ID   WP_029178656.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702839..1714188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS08240 (A7J09_08395) - 1704397..1704852 (-) 456 WP_029178534.1 ATP-binding cassette domain-containing protein -
  A7J09_RS08245 (A7J09_08400) - 1705091..1706293 (+) 1203 WP_148124345.1 IS110 family transposase -
  A7J09_RS08250 (A7J09_08410) vicX 1707029..1707832 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  A7J09_RS08255 (A7J09_08415) micB 1707839..1709188 (-) 1350 WP_029178656.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A7J09_RS08260 (A7J09_08420) micA 1709181..1709885 (-) 705 WP_029178655.1 response regulator YycF Regulator
  A7J09_RS08265 (A7J09_08425) - 1710079..1710840 (+) 762 WP_029178654.1 amino acid ABC transporter ATP-binding protein -
  A7J09_RS08270 (A7J09_08430) - 1710851..1711690 (+) 840 WP_029178653.1 transporter substrate-binding domain-containing protein -
  A7J09_RS08275 (A7J09_08435) - 1711705..1712403 (+) 699 WP_029174867.1 amino acid ABC transporter permease -
  A7J09_RS08280 (A7J09_08440) - 1712418..1713077 (+) 660 WP_014637676.1 amino acid ABC transporter permease -
  A7J09_RS08285 (A7J09_08445) - 1713200..1713475 (+) 276 WP_029174866.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51081.17 Da        Isoelectric Point: 4.5230

>NTDB_id=298270 A7J09_RS08255 WP_029178656.1 1707839..1709188(-) (micB) [Streptococcus suis strain ISU2812]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIEHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFMTFILNRFDQMKNADSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=298270 A7J09_RS08255 WP_029178656.1 1707839..1709188(-) (micB) [Streptococcus suis strain ISU2812]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATCACAGATATGGCTAATTCCCTCAATGATTTGTCCGAG
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACGTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATTATCATGATTAACGATATGGCCCAGAAACAGTTGGGGTTATCTAACCCAAAGC
AGGAGCAGTATCACCTGCTAGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGAACACACCAATGAAAACGAAGAATTTTTGACTTTACGCGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
TCTGATTTCTGGCCTGGTTGTCGTCTTGCATGATATGACCGAGCAAGCCAAGGAAGAACGGGAACGTAGGCTGTTTGTAT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTCAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
TTTATCGCGTATTGATAATCAAGTTGGTCAGATAGATGTCGAACTGATAAACTTTACTGCTTTTATGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCAGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTGGATAATATCTTAAATAATGCCATTAAATATTCGCCAGATGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTATCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCACGTGCCCAAGGTGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTAGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.954

97.105

0.679
  vicK Streptococcus mutans UA159

70.968

89.755

0.637

Multiple sequence alignment