Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DNK50_RS19380 Genome accession   NZ_CP029983
Coordinates   4264983..4267247 (-) Length   754 a.a.
NCBI ID   WP_256595306.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1E9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4259983..4272247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNK50_RS19345 murB 4260417..4261436 (-) 1020 WP_112195853.1 UDP-N-acetylmuramate dehydrogenase -
  DNK50_RS19350 - 4261433..4261897 (-) 465 WP_099586974.1 low molecular weight protein-tyrosine-phosphatase -
  DNK50_RS19355 kdsB 4261897..4262661 (-) 765 WP_099586975.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DNK50_RS19360 - 4262658..4262843 (-) 186 WP_003174668.1 Trm112 family protein -
  DNK50_RS19365 lpxK 4262868..4263878 (-) 1011 WP_099586976.1 tetraacyldisaccharide 4'-kinase -
  DNK50_RS19370 - 4263878..4264306 (-) 429 WP_099586977.1 biopolymer transporter ExbD -
  DNK50_RS19375 exbB 4264303..4264938 (-) 636 WP_099586978.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DNK50_RS19380 comA 4264983..4267247 (-) 2265 WP_256595306.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DNK50_RS19385 - 4267383..4267904 (+) 522 WP_112195857.1 DUF2062 domain-containing protein -
  DNK50_RS19390 - 4267901..4269274 (-) 1374 WP_112195859.1 sensor histidine kinase -
  DNK50_RS19395 - 4269258..4269986 (-) 729 WP_099586982.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 81800.93 Da        Isoelectric Point: 11.0504

>NTDB_id=298067 DNK50_RS19380 WP_256595306.1 4264983..4267247(-) (comA) [Pseudomonas sp. LG1E9]
MKTGMFALALGLLALRFLPALPTTGWLIAMLVLALMLLPFRTSPLAFFLLGLSWACISAQGALDDRLRPALDGQTRWLEG
RVVGLPQQTGTGVRFELADSRSRNARLPQRIRVSWHGGPEVRSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLSPARHAWRDTVRQRLIAVDAQGREAGLAALVLGDGSGLSAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VALLARYGFWPRTWPWLPWACGLAFAAALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSAWQAWTRPQWLIAIGLFPVLLVLGLPISVSAPLANLVAVPWISLVVLPVAL
LGTLMLPLPYLGEGLLWLAGGALEGLFRGLAWLAGHVPAWVPAEVPVGYWLVSLMGAVLLLLPKGVPFRLLGWPMLLLAV
FPPREPVPHGRVEVVQLDVGQGQSLVLRTRHHTLLYDAGPRSGAVDLGARVVLPALKKLGVGSLDLMLLSHADADHAGGA
AAVARGLPIRRVVGGETEGLPTFLGTQPCVSGEQWEWDGVLFELWQWPDASEGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSGAFLKRLAPTSVLISRGRGNAFGHPHPQVIARYQALGSRVYDSAEQGAVRLQL
GAFMPPVVARSQRRFWRERLPWSGVGSIADKPRR

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=298067 DNK50_RS19380 WP_256595306.1 4264983..4267247(-) (comA) [Pseudomonas sp. LG1E9]
ATGAAGACAGGGATGTTCGCACTCGCGCTGGGGTTGCTTGCCCTGCGTTTTCTACCGGCATTGCCGACGACTGGGTGGCT
GATAGCCATGCTGGTGCTGGCATTGATGCTGCTGCCATTTCGCACGTCGCCCCTGGCGTTTTTCCTGCTGGGTTTGAGCT
GGGCGTGCATCAGCGCGCAGGGGGCGCTGGATGATCGTCTGCGACCGGCGCTCGATGGCCAGACGCGATGGCTGGAGGGC
CGCGTCGTTGGGCTGCCGCAGCAGACCGGCACCGGAGTGCGTTTTGAACTGGCCGACAGTCGGTCGCGCAACGCCCGCTT
GCCCCAGCGTATCCGCGTGTCCTGGCACGGTGGGCCCGAGGTGCGCAGCGGGGAGCGTTGGCGCCTGGCTGTCACGCTTA
AACGGCCTTCCGGGCTGCTCAATTTTCACGGTTTTGATCAGGAGGCCTGGCTGCTGGCCCAGCGGATTGGCGCGACTGGC
TCAGTTAAGGACGGTGAGCGCCTGTCGCCGGCCCGGCATGCCTGGCGCGACACGGTGCGCCAACGGTTGATCGCCGTTGA
CGCTCAAGGTCGCGAGGCGGGCCTGGCCGCCTTGGTACTGGGAGATGGTTCCGGGCTGTCAGCCGAGGATTGGCAGGTCT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGCTTGCTGGCGGGCTTGATCTACGGGTTG
GTCGCGTTATTGGCACGCTACGGTTTCTGGCCCCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGTCTGGCGTTCGCTGC
CGCGCTGGCATACGGCTTGTTGGCGGGGTTCGGTGTGCCGGTTCAGCGGGCCTGTGTGATGGTAGGCCTGGTACTGCTGT
GGCGTTTACGCTTCCGTCATTTGGGGTTCTGGTGGCCATTGCTGCTGGCGCTTAATGGCGTACTGATTCTTGAGCCATTG
GCCAGCCTGCAACCGGGGTTTTGGCTGTCTTTTGCGGCTGTTGCCGTATTGATCCTGGCATTCGGTGGGCGCTTGGGGCC
GTGGAGTGCCTGGCAGGCCTGGACGCGCCCTCAATGGTTGATTGCCATTGGTCTGTTTCCCGTGTTGTTGGTGCTTGGAT
TGCCCATCAGCGTCAGCGCGCCGCTGGCCAATCTGGTGGCCGTACCGTGGATCAGTCTCGTGGTGTTGCCAGTGGCGTTG
CTGGGGACCCTGATGCTGCCGCTGCCTTATCTGGGGGAGGGCTTGCTGTGGCTGGCGGGTGGGGCGCTGGAGGGGTTGTT
CCGGGGCCTGGCGTGGCTCGCGGGGCACGTGCCCGCGTGGGTACCTGCCGAGGTGCCGGTGGGGTATTGGCTGGTCAGCC
TGATGGGCGCGGTGCTGCTATTGCTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCCATGCTGCTGTTGGCAGTC
TTTCCACCGCGCGAGCCGGTGCCCCATGGCCGGGTGGAGGTGGTGCAGTTGGATGTGGGGCAGGGGCAGTCCCTGGTGCT
GCGCACGCGCCATCACACGTTGCTCTACGATGCCGGCCCGCGTTCGGGGGCGGTTGACCTGGGGGCTCGCGTGGTGCTGC
CTGCGTTGAAAAAGCTCGGCGTCGGGTCGCTGGATCTGATGTTGCTCAGCCATGCTGACGCCGATCATGCCGGTGGGGCG
GCGGCTGTTGCCCGTGGGTTGCCCATCAGGCGGGTCGTAGGCGGTGAAACCGAGGGGTTGCCCACGTTTCTCGGCACCCA
GCCGTGTGTCAGCGGTGAGCAGTGGGAATGGGATGGTGTGTTATTCGAGCTGTGGCAGTGGCCTGATGCTTCAGAGGGCA
ACCCGAAGTCCTGCGTTCTGCAGGTCCAGGCCAACGGCGAGCGGCTGCTGCTCACCGGGGATATTGATCGGGCCGCCGAG
CGGGCATTTCTCGCCTCACCCTTGGCCGTACGCACCGATTGGCTGCAAGCCCCTCACCACGGCAGCCGCAGTTCGTCGTC
CGGGGCGTTTCTAAAGCGCCTGGCGCCCACATCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCCCATC
CGCAGGTCATTGCGCGGTACCAGGCGTTGGGCAGCCGGGTGTACGACAGCGCCGAACAGGGTGCCGTGCGCCTGCAACTG
GGCGCCTTCATGCCACCCGTTGTTGCGCGCAGTCAACGGCGTTTCTGGCGTGAACGGTTACCCTGGTCCGGCGTCGGCAG
CATTGCCGACAAACCCCGCCGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.417

95.491

0.577
  comA Ralstonia pseudosolanacearum GMI1000

35.346

100

0.373

Multiple sequence alignment