Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DNK50_RS19375 Genome accession   NZ_CP029983
Coordinates   4264303..4264938 (-) Length   211 a.a.
NCBI ID   WP_099586978.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1E9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4259303..4269938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNK50_RS19340 - 4259683..4260354 (+) 672 WP_078048997.1 Bax inhibitor-1/YccA family protein -
  DNK50_RS19345 murB 4260417..4261436 (-) 1020 WP_112195853.1 UDP-N-acetylmuramate dehydrogenase -
  DNK50_RS19350 - 4261433..4261897 (-) 465 WP_099586974.1 low molecular weight protein-tyrosine-phosphatase -
  DNK50_RS19355 kdsB 4261897..4262661 (-) 765 WP_099586975.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DNK50_RS19360 - 4262658..4262843 (-) 186 WP_003174668.1 Trm112 family protein -
  DNK50_RS19365 lpxK 4262868..4263878 (-) 1011 WP_099586976.1 tetraacyldisaccharide 4'-kinase -
  DNK50_RS19370 - 4263878..4264306 (-) 429 WP_099586977.1 biopolymer transporter ExbD -
  DNK50_RS19375 exbB 4264303..4264938 (-) 636 WP_099586978.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DNK50_RS19380 comA 4264983..4267247 (-) 2265 WP_256595306.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DNK50_RS19385 - 4267383..4267904 (+) 522 WP_112195857.1 DUF2062 domain-containing protein -
  DNK50_RS19390 - 4267901..4269274 (-) 1374 WP_112195859.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22785.97 Da        Isoelectric Point: 7.3613

>NTDB_id=298066 DNK50_RS19375 WP_099586978.1 4264303..4264938(-) (exbB) [Pseudomonas sp. LG1E9]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=298066 DNK50_RS19375 WP_099586978.1 4264303..4264938(-) (exbB) [Pseudomonas sp. LG1E9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCATGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTACTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTGGACAAGGAAAAACTCAAGGCACTGCGCGCTGACTCGCCCCTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCCGCGCGGGTTATCCATGAGCTGGAGCGCTATAT
CAATGCCCTTGGCACCATCGCTGCCATGGCGCCGCTGCTCGGTTTGCTGGGAACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAATGCGGCCGTGCTCGCCGGGGGTATTTCCAAGGCGTTGATCACTACGGCA
GCGGGCCTGATGGTGGGTATTCCTGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGTATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGATCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment