Detailed information NTG0298059

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DNK50_RS07615
• Genome accession: NZ_CP029983
• Coordinates: 1617051..1617917 (-)
• Length: 288 a.a.
• NCBI ID: WP_112193406.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LG1E9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1612051..1622917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DNK50_RS07580	-	1612907..1614205 (-)	1299	WP_112193401.1	NAD(P)/FAD-dependent oxidoreductase	-
DNK50_RS07585	-	1614266..1614439 (-)	174	WP_016976295.1	DUF3094 family protein	-
DNK50_RS07590	-	1614497..1615126 (-)	630	WP_099587043.1	DUF1780 domain-containing protein	-
DNK50_RS07595	-	1615256..1615945 (+)	690	WP_112193403.1	energy-coupling factor ABC transporter permease	-
DNK50_RS07600	-	1616022..1616237 (+)	216	WP_099587045.1	hypothetical protein	-
DNK50_RS07605	yacG	1616234..1616434 (-)	201	WP_099587046.1	DNA gyrase inhibitor YacG	-
DNK50_RS07610	coaE	1616431..1617054 (-)	624	WP_099587047.1	dephospho-CoA kinase	-
DNK50_RS07615	pilD	1617051..1617917 (-)	867	WP_112193406.1	A24 family peptidase	Machinery gene
DNK50_RS07620	pilC	1617914..1619122 (-)	1209	WP_112193408.1	type II secretion system F family protein	Machinery gene
DNK50_RS07625	-	1619325..1619738 (+)	414	WP_112193410.1	pilin	-
DNK50_RS07630	-	1619773..1621173 (+)	1401	WP_112193411.1	O-antigen ligase	-
DNK50_RS07640	-	1621463..1621768 (+)	306	WP_112193413.1	DUF6388 family protein	-
DNK50_RS07645	nadC	1621842..1622690 (-)	849	WP_112193414.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31868.85 Da
• Isoelectric Point: 7.3251

>NTDB_id=298059 DNK50_RS07615 WP_112193406.1 1617051..1617917(-) (pilD) [Pseudomonas sp. LG1E9]
MNLLLSESPWAFVAIASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLSLPAEPAGPTYNLMRPNSCCPHCDQPIRPW
ENIPVLSYLILRGRCAHCQGAISARYPLTELACALISAWVAWHFGFGWQAAAVLLLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSFELLTTLPDALWGAVIGYLSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLFMSSLVGVF
SGLILMRVRKTQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=298059 DNK50_RS07615 WP_112193406.1 1617051..1617917(-) (pilD) [Pseudomonas sp. LG1E9]
TTGAACCTGCTGTTGAGTGAGTCCCCCTGGGCATTTGTGGCGATAGCATCGGTACTGGGGCTGATCGTCGGCAGTTTTCT
CAATGTGCTGGTGTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCAGTTTGCCTG
CCGAGCCTGCAGGGCCGACCTACAACCTGATGCGCCCAAATTCCTGCTGCCCGCACTGTGATCAGCCAATTCGGCCCTGG
GAAAATATCCCCGTGCTCAGCTACCTGATACTCCGGGGACGCTGTGCTCATTGCCAAGGCGCCATCAGCGCCCGCTACCC
GTTAACCGAACTTGCGTGCGCGCTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCAGCGGTAC
TGCTGTTGAGCTGGGGGCTACTGGCGATGAGTTTGATCGACGCAGACCACCAGTTGCTCCCGGATGTGCTGGTGCTGCCG
TTGCTGTGGCTGGGGTTGATCGTCAACAGTTTTGAATTATTGACCACATTGCCCGATGCCCTTTGGGGCGCGGTGATCGG
CTATCTGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGAAAGGACGGCATGGGCCACGGTGACTTCAAGT
TACTGGCCTTGCTAGGCGCCTGGGGTGGCTGGCAGATTTTGCCGATGACGCTGTTTATGTCGTCGCTGGTAGGCGTGTTT
AGCGGGCTGATCCTGATGCGCGTGCGCAAGACCCAGGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	51.613	96.875	0.5
pilD	Neisseria gonorrhoeae MS11	51.711	91.319	0.472
pilD	Acinetobacter baumannii D1279779	49.451	94.792	0.469
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462