Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DNK50_RS07620 Genome accession   NZ_CP029983
Coordinates   1617914..1619122 (-) Length   402 a.a.
NCBI ID   WP_112193408.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1E9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612914..1624122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNK50_RS07585 - 1614266..1614439 (-) 174 WP_016976295.1 DUF3094 family protein -
  DNK50_RS07590 - 1614497..1615126 (-) 630 WP_099587043.1 DUF1780 domain-containing protein -
  DNK50_RS07595 - 1615256..1615945 (+) 690 WP_112193403.1 energy-coupling factor ABC transporter permease -
  DNK50_RS07600 - 1616022..1616237 (+) 216 WP_099587045.1 hypothetical protein -
  DNK50_RS07605 yacG 1616234..1616434 (-) 201 WP_099587046.1 DNA gyrase inhibitor YacG -
  DNK50_RS07610 coaE 1616431..1617054 (-) 624 WP_099587047.1 dephospho-CoA kinase -
  DNK50_RS07615 pilD 1617051..1617917 (-) 867 WP_112193406.1 A24 family peptidase Machinery gene
  DNK50_RS07620 pilC 1617914..1619122 (-) 1209 WP_112193408.1 type II secretion system F family protein Machinery gene
  DNK50_RS07625 - 1619325..1619738 (+) 414 WP_112193410.1 pilin -
  DNK50_RS07630 - 1619773..1621173 (+) 1401 WP_112193411.1 O-antigen ligase -
  DNK50_RS07640 - 1621463..1621768 (+) 306 WP_112193413.1 DUF6388 family protein -
  DNK50_RS07645 nadC 1621842..1622690 (-) 849 WP_112193414.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43241.59 Da        Isoelectric Point: 10.1404

>NTDB_id=298060 DNK50_RS07620 WP_112193408.1 1617914..1619122(-) (pilC) [Pseudomonas sp. LG1E9]
MNNPSTIYAWEGINRKGRRVSGQTKGHNPALVKAQLRLQGISPGRVRKQSPMLPGLAQSAKAADITLLTRQLATLLNAGI
PLLQAFDIISEGFDNRAVRELVQGLKQQVAAGASLADALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KAKVKKAMTYPIAVLVVASLVTGVLLVHVVPQFQTLFAGVGGKLPAFTLQVIALSAFMQQAWWMLVLGIAFAAMGLRKAY
RSSPGFSYWLDTGLLKAPLAGKLLTKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGNAPFKQAIEHMRHDVSTGMQLN
QSMTNSGLFPGMAIQMTAIGEESGMLEQMLERVANHYETDVDNQVDSLTSLMEPLIMVVLGGIVAALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=298060 DNK50_RS07620 WP_112193408.1 1617914..1619122(-) (pilC) [Pseudomonas sp. LG1E9]
ATGAACAACCCTTCAACGATCTACGCTTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAGACCAAAGGGCA
CAACCCTGCCCTGGTCAAGGCACAACTGCGCCTGCAAGGGATCAGCCCAGGTCGGGTGCGCAAGCAATCCCCGATGCTGC
CAGGCCTGGCCCAGTCGGCCAAGGCGGCTGACATCACCCTGCTCACTCGCCAACTGGCCACGCTACTGAACGCCGGAATC
CCCCTGCTGCAAGCCTTCGACATCATCAGCGAAGGCTTCGACAACCGCGCCGTGCGTGAGCTGGTGCAGGGGCTCAAACA
GCAGGTCGCAGCTGGCGCCAGCCTGGCCGACGCACTGCGCAAACAGCCGCGCTACTTCGATGAGCTGTACTGCAACCTGG
TAGCCGCCGGCGAGCAGGCCGGCGCATTGGAGACCCTGCTGGAGCGTGTGGCGATCCACCGGGAAAAGAGTGAGCAACTC
AAGGCCAAGGTCAAAAAGGCCATGACATACCCCATTGCGGTGCTGGTGGTTGCCAGCCTGGTCACCGGCGTACTGCTGGT
CCACGTCGTGCCGCAGTTCCAGACGCTGTTCGCCGGGGTCGGCGGCAAACTGCCGGCGTTTACCTTGCAGGTGATCGCCC
TGTCGGCATTCATGCAGCAAGCCTGGTGGATGCTGGTCTTGGGCATTGCCTTCGCAGCCATGGGGCTGCGTAAGGCCTAT
CGGTCATCGCCGGGTTTCAGCTATTGGCTGGACACCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGACAAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTTTCCACCACCTTTGCCGCCGGTGTTCCACTGGTACAGGCATTGGACTCAGTCG
CCGGCGCCGTGGGCAATGCTCCGTTCAAACAGGCAATCGAACATATGCGTCACGATGTATCCACTGGCATGCAGTTGAAT
CAATCCATGACCAACAGCGGTCTGTTTCCCGGCATGGCGATCCAGATGACGGCAATCGGCGAAGAATCGGGCATGCTGGA
ACAGATGCTGGAAAGAGTCGCCAACCACTATGAGACCGACGTGGACAACCAGGTCGATAGCCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGGTTCTGGGAGGCATCGTCGCAGCACTGGTCATCGCCATGTACCTGCCGGTCTTCCAACTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.95

98.756

0.592
  pilC Acinetobacter baylyi ADP1

52.525

98.507

0.517
  pilC Acinetobacter baumannii D1279779

52.152

98.259

0.512
  pilC Legionella pneumophila strain ERS1305867

48.622

99.254

0.483
  pilC Vibrio cholerae strain A1552

41.542

100

0.415
  pilC Vibrio campbellii strain DS40M4

39.394

98.507

0.388
  pilG Neisseria meningitidis 44/76-A

40.625

95.522

0.388
  pilG Neisseria gonorrhoeae MS11

40.625

95.522

0.388

Multiple sequence alignment