Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH15_RS02565 Genome accession   NZ_CP035265
Coordinates   497973..499022 (+) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901920     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 492973..504022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH15_RS02535 (EQH15_02660) - 493853..494209 (+) 357 WP_000114423.1 hypothetical protein -
  EQH15_RS02540 (EQH15_02665) dnaJ 494611..495747 (+) 1137 WP_001066292.1 molecular chaperone DnaJ -
  EQH15_RS02545 - 496069..496308 (-) 240 WP_001813906.1 hypothetical protein -
  EQH15_RS02550 (EQH15_02675) - 496470..496757 (-) 288 WP_000777760.1 hypothetical protein -
  EQH15_RS02555 (EQH15_02680) - 496767..497177 (-) 411 WP_001278301.1 HIT family protein -
  EQH15_RS02560 (EQH15_02685) pptA 497245..497976 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH15_RS02565 (EQH15_02690) pptB 497973..499022 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  EQH15_RS02570 (EQH15_02695) - 499190..499519 (-) 330 WP_000132572.1 hypothetical protein -
  EQH15_RS02575 (EQH15_02700) - 499796..500134 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  EQH15_RS02580 (EQH15_02705) comE/blpR 500139..500876 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  EQH15_RS02585 (EQH15_02710) - 500890..502230 (+) 1341 WP_001017622.1 sensor histidine kinase -
  EQH15_RS02590 (EQH15_02715) blpC 502272..502427 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  EQH15_RS02595 (EQH15_02720) - 502484..503845 (-) 1362 Protein_512 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=298005 EQH15_RS02565 WP_000653752.1 497973..499022(+) (pptB) [Streptococcus pneumoniae strain TVO_1901920]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=298005 EQH15_RS02565 WP_000653752.1 497973..499022(+) (pptB) [Streptococcus pneumoniae strain TVO_1901920]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467