Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DNL43_RS11390 Genome accession   NZ_CP029971
Coordinates   2375226..2376599 (-) Length   457 a.a.
NCBI ID   WP_056982928.1    Uniprot ID   A0A511DTZ4
Organism   Lentilactobacillus kefiri strain DH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2370226..2381599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNL43_RS11370 (DNL43_11485) - 2370480..2370890 (-) 411 WP_054769179.1 Mini-ribonuclease 3 -
  DNL43_RS11375 (DNL43_11490) cysS 2370899..2372305 (-) 1407 WP_056982935.1 cysteine--tRNA ligase -
  DNL43_RS11380 (DNL43_11495) gltX 2372446..2373939 (-) 1494 WP_056982933.1 glutamate--tRNA ligase -
  DNL43_RS11385 (DNL43_11500) - 2374027..2375202 (-) 1176 WP_056982931.1 PIN/TRAM domain-containing protein -
  DNL43_RS11390 (DNL43_11505) radA 2375226..2376599 (-) 1374 WP_056982928.1 DNA repair protein RadA Machinery gene
  DNL43_RS11395 (DNL43_11510) - 2376692..2377231 (-) 540 WP_054769178.1 dUTP diphosphatase -
  DNL43_RS11400 (DNL43_11515) rpiA 2377376..2378059 (+) 684 WP_056982926.1 ribose-5-phosphate isomerase RpiA -
  DNL43_RS11405 (DNL43_11520) - 2378202..2379536 (+) 1335 WP_056982924.1 aminopeptidase C -
  DNL43_RS11410 (DNL43_11525) - 2379600..2380253 (-) 654 WP_261907081.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  DNL43_RS11415 (DNL43_11530) - 2380399..2381343 (-) 945 WP_056982921.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49656.06 Da        Isoelectric Point: 7.7031

>NTDB_id=298006 DNL43_RS11390 WP_056982928.1 2375226..2376599(-) (radA) [Lentilactobacillus kefiri strain DH5]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETVAPKNSTMATKSLRRNGIHDNKPEAINKVEFHQDVRFKTDMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSKSGTILYVSGEESASQIKMRADRLGVNSDNLYVYPETDMDVIK
DTINDMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMRTDGLREVKNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNAQRTATGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLT
GEIRRVTRIEQRVAEAQKLGFKRVLVPANNLQGWNPPKGIDVVGVSTLSQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=298006 DNL43_RS11390 WP_056982928.1 2375226..2376599(-) (radA) [Lentilactobacillus kefiri strain DH5]
TTGGCAAAAGTTAAAACTCAATTTGTATGTCAAAACTGCGGCTACATTTCCCCAAGGTATTTGGGACGCTGTCCGAACTG
TAATGAGTGGAACACCCTCGTTGAAGAAACCGTTGCACCGAAAAACAGTACCATGGCAACAAAGAGTTTGCGGCGAAATG
GCATTCATGACAACAAACCCGAAGCAATCAATAAAGTTGAATTTCACCAAGACGTTCGTTTTAAGACTGATATGGAAGAG
CTCAACCGAGTTCTTGGCGGCGGGGTTGTTCCCGGATCACTGATTTTAATCGGTGGCGATCCTGGAATTGGAAAATCAAC
GTTGATGCTGCAGGTTTCAGGTCAGCTTAGCAAGTCTGGTACCATATTATATGTATCCGGAGAGGAAAGTGCCTCGCAGA
TTAAGATGCGGGCCGATCGACTGGGTGTCAACAGTGATAACCTCTATGTTTATCCGGAAACCGATATGGACGTGATTAAG
GATACAATCAATGATATGAAGCCGGATGCGGTGGTCATTGATTCTGTTCAAACCATGCAGATTCCTGAATTGCAGTCGGC
TACCGGATCGGTTGCCCAGATCAGAGAAGTAACCGCTGACCTGATGAACATTGCCAAGGGTCAGGGCATTACGGTCTTTG
TTGTCGGTCATGTGACCAAGGGTGGCGCGATCGCCGGACCAAAGATTTTGGAACACATGGTGGACACTGTCCTGTATTTT
GAAGGTGATTTACATCACTCATACCGAATCTTGCGAACGGTTAAGAATCGATTTGGTTCAACCAATGAATTGGGTGTGTT
TGAAATGCGGACCGATGGCTTGCGCGAAGTGAAGAACCCTTCGGAAATCTTTTTGGAAGAACGGCTTAAAGATGCGACTG
GATCTGCCATTGTGGTATCAATGGAAGGAACCCGGCCAATTTTGGTTGAAATTCAGGCTTTGGTGACGGCTTCTGTATTC
GGGAATGCCCAACGAACAGCTACTGGTCTTGACCGTAATCGGGTATCATTGATTATGGCAGTTTTGGAAAAGCGTGCCGG
ATTGATGCTTCAAAACCAGGATGCTTATTTAAAGGCTGCCGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTGGCAA
TCGCTGTTAGTATTGCTTCATCATACAAAAACCGGGGTACCAGTCCAACTGAGTGTTATGTCGGTGAACTTGGGCTTACC
GGTGAGATTCGTCGGGTCACCAGGATTGAACAACGGGTTGCCGAGGCACAGAAATTGGGCTTTAAACGCGTGTTGGTGCC
AGCCAACAATCTTCAGGGATGGAACCCACCAAAAGGTATCGATGTGGTGGGAGTTTCAACCCTTTCACAAGCATTAAAGC
TTGCACTGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A511DTZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.615

99.562

0.643
  radA Streptococcus mitis SK321

64.396

99.562

0.641
  radA Streptococcus pneumoniae Rx1

64.396

99.562

0.641
  radA Streptococcus pneumoniae TIGR4

64.396

99.562

0.641
  radA Streptococcus pneumoniae D39

64.396

99.562

0.641
  radA Streptococcus pneumoniae R6

64.396

99.562

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

62.609

100

0.63

Multiple sequence alignment