Detailed information NTG0297952

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: EQH16_RS09605
• Genome accession: NZ_CP035264
• Coordinates: 1850988..1851887 (-)
• Length: 299 a.a.
• NCBI ID: WP_000904859.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901921
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1845988..1856887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH16_RS09580 (EQH16_10065)	rsmA	1846213..1847085 (-)	873	WP_001216856.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
EQH16_RS09585	-	1847336..1847629 (-)	294	Protein_1903	hypothetical protein	-
EQH16_RS09590 (EQH16_10070)	-	1847622..1848263 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
EQH16_RS09595 (EQH16_10075)	-	1848265..1850295 (-)	2031	WP_000825243.1	bacteriocin-associated integral membrane family protein	-
EQH16_RS09600 (EQH16_10080)	-	1850372..1850668 (-)	297	WP_000815392.1	lactococcin 972 family bacteriocin	-
EQH16_RS09605 (EQH16_10085)	comR	1850988..1851887 (-)	900	WP_000904859.1	helix-turn-helix transcriptional regulator	Regulator
EQH16_RS09610 (EQH16_10090)	rnmV	1851959..1852519 (-)	561	WP_000660005.1	ribonuclease M5	-
EQH16_RS09615 (EQH16_10095)	-	1852519..1853292 (-)	774	WP_000575644.1	TatD family hydrolase	-
EQH16_RS09620 (EQH16_10105)	-	1853597..1854556 (-)	960	Protein_1910	DUF1542 domain-containing protein	-
EQH16_RS09625 (EQH16_10110)	rpmH	1854762..1854896 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
EQH16_RS09630 (EQH16_10115)	-	1855041..1856255 (-)	1215	WP_000666471.1	pyridoxal phosphate-dependent aminotransferase	-
EQH16_RS09635 (EQH16_10120)	-	1856411..1856704 (-)	294	WP_000977371.1	hypothetical protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35307.11 Da
• Isoelectric Point: 4.8952

>NTDB_id=297952 EQH16_RS09605 WP_000904859.1 1850988..1851887(-) (comR) [Streptococcus pneumoniae strain TVO_1901921]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=297952 EQH16_RS09605 WP_000904859.1 1850988..1851887(-) (comR) [Streptococcus pneumoniae strain TVO_1901921]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	37.755	98.328	0.371
comR	Streptococcus suis P1/7	38.144	97.324	0.371
comR	Streptococcus suis 05ZYH33	38.144	97.324	0.371
comR	Streptococcus suis D9	36.12	100	0.361