Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EQH16_RS01130 Genome accession   NZ_CP035264
Coordinates   200016..200609 (+) Length   197 a.a.
NCBI ID   WP_000271489.1    Uniprot ID   Q8DRE8
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195016..205609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS01110 (EQH16_01150) ribE 196198..196665 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  EQH16_RS01115 (EQH16_01155) - 196666..197871 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  EQH16_RS01120 (EQH16_01160) ribE 197891..198526 (-) 636 WP_000493839.1 riboflavin synthase -
  EQH16_RS01125 (EQH16_01165) ribD 198511..199611 (-) 1101 WP_001284105.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  EQH16_RS01130 (EQH16_01170) ruvA 200016..200609 (+) 594 WP_000271489.1 Holliday junction branch migration protein RuvA Machinery gene
  EQH16_RS01135 (EQH16_01175) - 200619..201182 (+) 564 WP_000166593.1 DNA-3-methyladenine glycosylase I -
  EQH16_RS01140 (EQH16_01180) - 201179..201856 (+) 678 WP_000987432.1 CPBP family intramembrane glutamic endopeptidase -
  EQH16_RS01145 (EQH16_01185) - 202011..203042 (-) 1032 WP_000255094.1 S66 peptidase family protein -
  EQH16_RS01150 (EQH16_01190) - 203297..203980 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  EQH16_RS01155 (EQH16_01195) - 203992..204936 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21548.06 Da        Isoelectric Point: 7.3085

>NTDB_id=297875 EQH16_RS01130 WP_000271489.1 200016..200609(+) (ruvA) [Streptococcus pneumoniae strain TVO_1901921]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=297875 EQH16_RS01130 WP_000271489.1 200016..200609(+) (ruvA) [Streptococcus pneumoniae strain TVO_1901921]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

100

100

1
  ruvA Streptococcus pneumoniae D39

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416